.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "gallery/example_chemicaldrift.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code .. rst-class:: sphx-glr-example-title .. _sphx_glr_gallery_example_chemicaldrift.py: ChemicalDrift - Transport and fate of organic compounds ======================================================== .. GENERATED FROM PYTHON SOURCE LINES 6-43 .. code-block:: Python from opendrift.readers import reader_netCDF_CF_generic from opendrift.models.chemicaldrift import ChemicalDrift from opendrift.readers.reader_constant import Reader as ConstantReader from datetime import timedelta, datetime import matplotlib.pyplot as plt import numpy as np o = ChemicalDrift(loglevel=0, seed=0) # Norkyst reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be') mixed_layer = ConstantReader({'ocean_mixed_layer_thickness': 40}) o.add_reader([reader_norkyst,mixed_layer]) o.set_config('drift:vertical_mixing', True) o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994') o.set_config('chemical:particle_diameter',30.e-6) # m o.set_config('chemical:particle_diameter_uncertainty',5.e-6) # m o.set_config('chemical:sediment:resuspension_critvel',0.15) # m/s o.set_config('chemical:transformations:volatilization', True) o.set_config('chemical:transformations:degradation', True) o.set_config('chemical:transformations:degradation_mode', 'OverallRateConstants') o.set_config('seed:LMM_fraction',.9) o.set_config('seed:particle_fraction',.1) o.set_config('general:coastline_action', 'previous') o.init_chemical_compound("Phenanthrene") # Modify half-life times with unrealistic values for this demo o.set_config('chemical:transformations:t12_W_tot', 6.) # hours o.set_config('chemical:transformations:t12_S_tot', 12.) # hours o.list_configspec() .. rst-class:: sphx-glr-script-out .. code-block:: none 14:39:57 DEBUG opendrift.config:161: Adding 16 config items from __init__ 14:39:57 DEBUG opendrift.config:171: Overwriting config item readers:max_number_of_fails 14:39:57 DEBUG opendrift.config:161: Adding 13 config items from __init__ 14:39:57 INFO opendrift.models.basemodel:533: OpenDriftSimulation initialised (version 1.11.2 / v1.11.2-37-g34f6117) 14:39:57 DEBUG opendrift.config:161: Adding 15 config items from oceandrift 14:39:57 DEBUG opendrift.config:171: Overwriting config item seed:z 14:39:57 DEBUG opendrift.config:161: Adding 71 config items from chemicaldrift 14:39:57 INFO opendrift.readers.reader_netCDF_CF_generic:102: Opening dataset: https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:00 DEBUG opendrift.readers.reader_netCDF_CF_generic:119: Finding coordinate variables. 14:40:00 DEBUG opendrift.readers.reader_netCDF_CF_generic:134: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'straight_vertical_longitude_from_pole': 70.0, 'latitude_of_projection_origin': 90.0, 'standard_parallel': 60.0, 'false_easting': 3192800.0, 'false_northing': 1784000.0, 'semi_major_axis': 6378137.0, 'semi_minor_axis': 6356752.3142, 'proj4': '+proj=stere +lat_0=90 +lat_ts=60 +lon_0=70 +x_0=3192800 +y_0=1784000 +a=6378137 +b=6356752.3142 +units=m +no_defs +type=crs'} 14:40:00 INFO opendrift.readers.reader_netCDF_CF_generic:314: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'} 14:40:00 DEBUG opendrift.readers.reader_netCDF_CF_generic:340: Skipped variables without standard_name: ['angle', 'tke', 'ubar', 'vbar'] 14:40:00 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 25 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 5 m/s and time span of 1:00:00 14:40:00 DEBUG opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated 14:40:00 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_wind', 'y_wind'] -> wind_speed 14:40:00 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed 14:40:00 DEBUG opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated 14:40:00 DEBUG opendrift.models.basemodel.environment:328: Added reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:00 DEBUG opendrift.models.basemodel.environment:328: Added reader constant_reader environment:constant:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c... environment:fallback:x_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c... environment:constant:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c... environment:fallback:y_sea_water_velocity [None] float min: -15, max: 15 [m/s] Component of ocean c... environment:constant:sea_surface_height [None] float min: None, max: None [None] Use constant value f... environment:fallback:sea_surface_height [0] float min: None, max: None [None] Fallback value for s... environment:constant:x_wind [None] float min: -50, max: 50 [m/s] Component of wind al... environment:fallback:x_wind [0] float min: -50, max: 50 [m/s] Component of wind al... environment:constant:y_wind [None] float min: -50, max: 50 [m/s] Component of wind al... environment:fallback:y_wind [0] float min: -50, max: 50 [m/s] Component of wind al... environment:constant:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea... environment:fallback:land_binary_mask [None] float min: 0, max: 1 [None] 1 is land, 0 is sea... environment:constant:sea_floor_depth_below_sea_level [None] float min: -20, max: 12000 [None] Depth of seafloor... environment:fallback:sea_floor_depth_below_sea_level [10000] float min: -20, max: 12000 [None] Depth of seafloor... environment:constant:ocean_vertical_diffusivity [None] float min: 0, max: 1 [None] Use constant value f... environment:fallback:ocean_vertical_diffusivity [0.0001] float min: 0, max: 1 [None] Fallback value for o... environment:constant:sea_water_temperature [None] float min: None, max: None [None] Use constant value f... environment:fallback:sea_water_temperature [10] float min: None, max: None [None] Fallback value for s... environment:constant:sea_water_salinity [None] float min: None, max: None [None] Use constant value f... environment:fallback:sea_water_salinity [34] float min: None, max: None [None] Fallback value for s... environment:constant:upward_sea_water_velocity [None] float min: None, max: None [None] Use constant value f... environment:fallback:upward_sea_water_velocity [0] float min: None, max: None [None] Fallback value for u... environment:constant:spm [None] float min: None, max: None [None] Use constant value f... environment:fallback:spm [1] float min: None, max: None [None] Fallback value for s... environment:constant:ocean_mixed_layer_thickness [None] float min: None, max: None [None] Use constant value f... environment:fallback:ocean_mixed_layer_thickness [50] float min: None, max: None [None] Fallback value for o... environment:constant:active_sediment_layer_thickness [None] float min: None, max: None [None] Use constant value f... environment:fallback:active_sediment_layer_thickness [0.03] float min: None, max: None [None] Fallback value for a... environment:constant:doc [None] float min: None, max: None [None] Use constant value f... environment:fallback:doc [0.0] float min: None, max: None [None] Fallback value for d... environment:constant:sea_water_ph_reported_on_total_scale [None] float min: None, max: None [None] Use constant value f... environment:fallback:sea_water_ph_reported_on_total_scale [8.1] float min: None, max: None [None] Fallback value for s... environment:constant:pH_sediment [None] float min: None, max: None [None] Use constant value f... environment:fallback:pH_sediment [6.9] float min: None, max: None [None] Fallback value for p... general:use_auto_landmask [True] bool A built-in GSHHG glo... drift:current_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb... drift:current_uncertainty_uniform [0] float min: 0, max: 5 [m/s] Add gaussian perturb... drift:max_speed [2.0] float min: 0, max: inf [seconds] Typical maximum spee... readers:max_number_of_fails [1] int min: 0, max: 1000000.0 [number] Readers are discarde... general:coastline_action [previous] enum ['none', 'stranding', 'previous'] None means that obje... general:time_step_minutes [60] float min: 0.01, max: 1440 [minutes] Calculation time ste... general:time_step_output_minutes [None] float min: 1, max: 1440 [minutes] Output time step, i.... seed:ocean_only [True] bool If True, elements se... seed:number [1] int min: 1, max: 100000000 [1] The number of elemen... drift:max_age_seconds [None] float min: 0, max: inf [seconds] Elements will be dea... drift:advection_scheme [euler] enum ['euler', 'runge-kutta', 'runge-kutta4'] Numerical advection ... drift:horizontal_diffusivity [0] float min: 0, max: 100000 [m2/s] Add horizontal diffu... drift:profiles_depth [50] float min: 0, max: None [meters] Environment profiles... drift:wind_uncertainty [0] float min: 0, max: 5 [m/s] Add gaussian perturb... drift:relative_wind [False] bool If True, wind drift ... drift:deactivate_north_of [None] float min: -90, max: 90 [degrees] Elements are deactiv... drift:deactivate_south_of [None] float min: -90, max: 90 [degrees] Elements are deactiv... drift:deactivate_east_of [None] float min: -360, max: 360 [degrees] Elements are deactiv... drift:deactivate_west_of [None] float min: -360, max: 360 [degrees] Elements are deactiv... seed:origin_marker [0] float min: None, max: None [None] An integer kept cons... seed:z [0] float min: -10000, max: 0 [m] Depth below sea leve... seed:wind_drift_factor [0.02] float min: None, max: None [1] Elements at surface ... seed:current_drift_factor [1] float min: None, max: None [1] Elements are moved w... seed:terminal_velocity [0.0] float min: None, max: None [m/s] Terminal rise/sinkin... seed:diameter [0.0] float min: None, max: None [m] Seeding value of dia... seed:density [2650.0] float min: None, max: None [kg/m^3] Seeding value of den... seed:specie [0] float min: None, max: None [] Seeding value of spe... seed:mass [1000.0] float min: None, max: None [ug] Seeding value of mas... seed:mass_degraded [0] float min: None, max: None [ug] Seeding value of mas... seed:mass_degraded_water [0] float min: None, max: None [ug] Seeding value of mas... seed:mass_degraded_sediment [0] float min: None, max: None [ug] Seeding value of mas... seed:mass_volatilized [0] float min: None, max: None [ug] Seeding value of mas... drift:vertical_advection [True] bool Advect elements with... drift:vertical_mixing [True] bool Activate vertical mi... vertical_mixing:timestep [60] float min: 0.1, max: 3600 [seconds] Time step used for i... vertical_mixing:diffusivitymodel [windspeed_Large1994] enum ['environment', 'stepfunction', 'windspeed_Sundby1983', 'windspeed_Large1994', 'gls_tke', 'constant'] Algorithm/source use... vertical_mixing:background_diffusivity [1.2e-05] float min: 0, max: 1 [m2s-1] Background diffusivi... vertical_mixing:TSprofiles [False] bool Update T and S profi... drift:wind_drift_depth [0.1] float min: 0, max: 10 [meters] The direct wind drif... drift:stokes_drift [True] bool Advection elements w... drift:stokes_drift_profile [Phillips] enum ['monochromatic', 'exponential', 'Phillips', 'windsea_swell'] Algorithm to calcula... drift:use_tabularised_stokes_drift [False] bool If True, Stokes drif... drift:tabularised_stokes_drift_fetch [25000] enum ['5000', '25000', '50000'] The fetch length whe... general:seafloor_action [lift_to_seafloor] enum ['none', 'lift_to_seafloor', 'deactivate', 'previous'] "deactivate": elemen... drift:truncate_ocean_model_below_m [None] float min: 0, max: 10000 [m] Ocean model data are... seed:seafloor [False] bool Elements are seeded ... chemical:transfer_setup [organics] enum ['Sandnesfj_Al', 'metals', '137Cs_rev', 'custom', 'organics'] ... chemical:dynamic_partitioning [True] bool Toggle dynamic parti... chemical:slowly_fraction [False] bool ... chemical:irreversible_fraction [False] bool ... chemical:dissolved_diameter [0] float min: 0, max: 0.0001 [m] ... chemical:particle_diameter [3e-05] float min: 0, max: 0.0001 [m] ... chemical:particle_concentration_half_depth [20] float min: 0, max: 100 [m] ... chemical:doc_concentration_half_depth [1000] float min: 0, max: 1000 [m] ... chemical:particle_diameter_uncertainty [5e-06] float min: 0, max: 0.0001 [m] ... seed:LMM_fraction [0.9] float min: 0, max: 1 [] ... seed:particle_fraction [0.1] float min: 0, max: 1 [] ... chemical:species:LMM [True] bool Toggle LMM species... chemical:species:LMMcation [False] bool ... chemical:species:LMManion [False] bool ... chemical:species:Colloid [False] bool ... chemical:species:Humic_colloid [False] bool ... chemical:species:Polymer [False] bool ... chemical:species:Particle_reversible [True] bool ... chemical:species:Particle_slowly_reversible [False] bool ... chemical:species:Particle_irreversible [False] bool ... chemical:species:Sediment_reversible [True] bool ... chemical:species:Sediment_slowly_reversible [False] bool ... chemical:species:Sediment_irreversible [False] bool ... chemical:transformations:Kd [2.0] float min: 0, max: 1000000000.0 [m3/kg] ... chemical:transformations:S0 [0.0] float min: 0, max: 100 [PSU] parameter controllin... chemical:transformations:Dc [1.16e-05] float min: 0, max: 1000000.0 [] ... chemical:transformations:slow_coeff [0] float min: 0, max: 1000000.0 [] ... chemical:transformations:volatilization [True] bool Chemical is evaporat... chemical:transformations:degradation [True] bool Chemical mass is deg... chemical:transformations:degradation_mode [OverallRateConstants] enum ['OverallRateConstants'] ... chemical:transformations:dissociation [nondiss] enum ['nondiss', 'acid', 'base', 'amphoter'] ... chemical:transformations:LogKOW [4.505] float min: -3, max: 10 [Log L/Kg] ... chemical:transformations:TrefKOW [25.0] float min: -3, max: 30 [C] ... chemical:transformations:DeltaH_KOC_Sed [-24900.0] float min: -100000.0, max: 100000.0 [J/mol] ... chemical:transformations:DeltaH_KOC_DOM [-25900.0] float min: -100000.0, max: 100000.0 [J/mol] ... chemical:transformations:Setchenow [0.3026] float min: 0, max: 1 [L/mol] ... chemical:transformations:pKa_acid [-1] float min: -1, max: 14 [] ... chemical:transformations:pKa_base [-1] float min: -1, max: 14 [] ... chemical:transformations:KOC_DOM [-1] float min: -1, max: 10000000000 [L/KgOC] ... chemical:transformations:KOC_sed [-1] float min: -1, max: 10000000000 [L/KgOC] ... chemical:transformations:fOC_SPM [0.05] float min: 0.01, max: 0.1 [gOC/g] ... chemical:transformations:fOC_sed [0.05] float min: 0.01, max: 0.1 [gOC/g] ... chemical:transformations:aggregation_rate [0] float min: 0, max: 1 [s-1] ... chemical:transformations:t12_W_tot [6.0] float min: 1, max: None [hours] half life in water, ... chemical:transformations:Tref_kWt [25.0] float min: -3, max: 30 [C] ... chemical:transformations:DeltaH_kWt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ... chemical:transformations:t12_S_tot [12.0] float min: 1, max: None [hours] half life in sedimen... chemical:transformations:Tref_kSt [25.0] float min: -3, max: 30 [C] ... chemical:transformations:DeltaH_kSt [50000.0] float min: -100000.0, max: 100000.0 [J/mol] ... chemical:transformations:MolWt [178.226] float min: 50, max: 1000 [amu] molecular weight... chemical:transformations:Henry [4.294e-05] float min: None, max: None [atm m3 mol-1] Henry constant... chemical:transformations:Vpress [0.0222] float min: None, max: None [Pa] Vapour pressure... chemical:transformations:Tref_Vpress [25.0] float min: None, max: None [C] Vapour pressure ref ... chemical:transformations:DeltaH_Vpress [71733.0] float min: -100000.0, max: 115000.0 [J/mol] Enthalpy of volatili... chemical:transformations:Solub [1.09] float min: None, max: None [g/m3] Solubility... chemical:transformations:Tref_Solub [25.0] float min: None, max: None [C] Solubility ref temp... chemical:transformations:DeltaH_Solub [34800.0] float min: -100000.0, max: 100000.0 [J/mol] Enthalpy of solubili... chemical:sediment:mixing_depth [0.03] float min: 0, max: 100 [m] ... chemical:sediment:density [2600] float min: 0, max: 10000 [kg/m3] ... chemical:sediment:effective_fraction [0.9] float min: 0, max: 1 [] ... chemical:sediment:corr_factor [0.1] float min: 0, max: 10 [] ... chemical:sediment:porosity [0.6] float min: 0, max: 1 [] ... chemical:sediment:layer_thickness [1] float min: 0, max: 100 [m] ... chemical:sediment:desorption_depth [1] float min: 0, max: 100 [m] ... chemical:sediment:desorption_depth_uncert [0.5] float min: 0, max: 100 [m] ... chemical:sediment:resuspension_depth [1] float min: 0, max: 100 [m] ... chemical:sediment:resuspension_depth_uncert [0.5] float min: 0, max: 100 [m] ... chemical:sediment:resuspension_critvel [0.15] float min: 0, max: 1 [m/s] ... chemical:sediment:burial_rate [3e-05] float min: 0, max: 10 [m/year] ... chemical:sediment:buried_leaking_rate [0] float min: 0, max: 10 [s-1] ... chemical:compound [Phenanthrene] enum ['Naphthalene', 'Phenanthrene', 'Fluoranthene', 'Benzo-a-anthracene', 'Benzo-a-pyrene', 'Dibenzo-ah-anthracene', 'C1-Naphthalene', 'Acenaphthene', 'Acenaphthylene', 'Fluorene', 'Dibenzothiophene', 'C2-Naphthalene', 'Anthracene', 'C3-Naphthalene', 'C1-Dibenzothiophene', 'Pyrene', 'C1-Phenanthrene', 'C2-Dibenzothiophene', 'C2-Phenanthrene', 'Benzo-b-fluoranthene', 'Chrysene', 'C3-Dibenzothiophene', 'C3-Phenanthrene', 'Benzo-k-fluoranthene', 'Benzo-ghi-perylene', 'Indeno-123cd-pyrene', 'Copper', 'Cadmium', 'Chromium', 'Lead', 'Vanadium', 'Zinc', 'Nickel', None] ... .. GENERATED FROM PYTHON SOURCE LINES 44-45 Seeding 500 lagrangian elements each representign 2mg og target chemical .. GENERATED FROM PYTHON SOURCE LINES 45-57 .. code-block:: Python td=datetime.today() time = td - timedelta(days=10) latseed= 57.6; lonseed= 10.6 # Skagen ntraj=500 iniz=np.random.rand(ntraj) * -10. # seeding the chemicals in the upper 10m o.seed_elements(lonseed, latseed, z=iniz, radius=2000,number=ntraj,time=time, mass=2e3) .. rst-class:: sphx-glr-script-out .. code-block:: none 14:40:00 DEBUG opendrift.models.chemicaldrift:870: Partitioning coefficients (Tref,freshwater) 14:40:00 DEBUG opendrift.models.chemicaldrift:871: KOC_sed: 12953.922406542462 L/KgOC 14:40:00 DEBUG opendrift.models.chemicaldrift:872: KOC_SPM: 12953.922406542462 L/KgOC 14:40:00 DEBUG opendrift.models.chemicaldrift:873: KOC_DOM: 3004.29439651874 L/KgOC 14:40:00 DEBUG opendrift.models.chemicaldrift:885: Kd_sed: 647.6961203271231 L/Kg 14:40:00 DEBUG opendrift.models.chemicaldrift:886: Kd_SPM: 647.6961203271231 L/Kg 14:40:00 DEBUG opendrift.models.chemicaldrift:887: Kd_DOM: 1580.2588525688573 L/Kg 14:40:00 DEBUG opendrift.models.chemicaldrift:1104: nspecies: 5 14:40:00 DEBUG opendrift.models.chemicaldrift:1105: Transfer rates: [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02 0.00000000e+00] [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00] [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00] [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00 3.16887646e-11] [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00]] 14:40:00 DEBUG opendrift.models.chemicaldrift:509: Initial partitioning: 14:40:00 DEBUG opendrift.models.chemicaldrift:511: 449 0 LMM 14:40:00 DEBUG opendrift.models.chemicaldrift:511: 0 1 Humic colloid 14:40:00 DEBUG opendrift.models.chemicaldrift:511: 51 2 Particle reversible 14:40:00 DEBUG opendrift.models.chemicaldrift:511: 0 3 Sediment reversible 14:40:00 DEBUG opendrift.models.chemicaldrift:511: 0 4 Sediment slowly reversible 14:40:00 INFO opendrift.models.basemodel.environment:218: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster... 14:40:00 DEBUG opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated 14:40:06 DEBUG opendrift.models.basemodel.environment:328: Added reader global_landmask 14:40:06 INFO opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers: 14:40:06 INFO opendrift.models.basemodel.environment:248: sea_surface_height: 0.000000 14:40:06 INFO opendrift.models.basemodel.environment:248: ocean_vertical_diffusivity: 0.000100 14:40:06 INFO opendrift.models.basemodel.environment:248: spm: 1.000000 14:40:06 INFO opendrift.models.basemodel.environment:248: active_sediment_layer_thickness: 0.030000 14:40:06 INFO opendrift.models.basemodel.environment:248: doc: 0.000000 14:40:06 INFO opendrift.models.basemodel.environment:248: sea_water_ph_reported_on_total_scale: 8.100000 14:40:06 INFO opendrift.models.basemodel.environment:248: pH_sediment: 6.900000 14:40:06 DEBUG opendrift.models.basemodel:92: Changed mode from Mode.Config to Mode.Ready .. GENERATED FROM PYTHON SOURCE LINES 58-59 Running model .. GENERATED FROM PYTHON SOURCE LINES 59-63 .. code-block:: Python o.run(steps=48*2, time_step=1800, time_step_output=1800) .. rst-class:: sphx-glr-script-out .. code-block:: none 14:40:06 DEBUG opendrift.models.basemodel:92: Changed mode from Mode.Ready to Mode.Run 14:40:06 DEBUG opendrift.models.basemodel:1751: ------------------------------------------------------ Software and hardware: OpenDrift version 1.11.2 Platform: Linux, 5.15.0-1053-aws 69.05994033813477 GB memory 36 processors (x86_64) NumPy version 1.26.4 SciPy version 1.13.0 Matplotlib version 3.8.4 NetCDF4 version 1.6.1 Xarray version 2024.3.0 Python version 3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:40:35) [GCC 12.3.0] ------------------------------------------------------ 14:40:06 DEBUG opendrift.models.basemodel:1765: No output file is specified, neglecting export_buffer_length 14:40:06 DEBUG opendrift.models.basemodel:1883: Finalizing environment and preparing readers for simulation coverage ([4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995]) and time (2024-04-16 14:40:00.815900 to 2024-04-18 14:40:00.815900) 14:40:06 DEBUG opendrift.models.basemodel.environment:180: Preparing https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995] 14:40:06 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be before starting new simulation 14:40:06 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 11 for reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be, assuming a maximum average speed of 2 m/s and time span of 1:00:00 14:40:06 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:06 DEBUG opendrift.models.basemodel.environment:180: Preparing constant_reader for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995] 14:40:06 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for constant_reader 14:40:06 DEBUG opendrift.models.basemodel.environment:180: Preparing global_landmask for extent [4.69639997080836, 54.43270917325407, 16.516793922624256, 60.761642023034995] 14:40:06 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for global_landmask 14:40:06 INFO opendrift.models.basemodel:911: Using existing reader for land_binary_mask 14:40:06 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:06 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:06 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:06 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:06 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:06 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:06 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:06 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:06 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:06 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:06 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:06 INFO opendrift.models.basemodel:922: All points are in ocean 14:40:06 INFO opendrift.models.chemicaldrift:352: Number of species: 5 14:40:06 INFO opendrift.models.chemicaldrift:354: 0 LMM 14:40:06 INFO opendrift.models.chemicaldrift:354: 1 Humic colloid 14:40:06 INFO opendrift.models.chemicaldrift:354: 2 Particle reversible 14:40:06 INFO opendrift.models.chemicaldrift:354: 3 Sediment reversible 14:40:06 INFO opendrift.models.chemicaldrift:354: 4 Sediment slowly reversible 14:40:06 INFO opendrift.models.chemicaldrift:357: transfer setup: organics 14:40:06 INFO opendrift.models.chemicaldrift:359: nspecies: 5 14:40:06 INFO opendrift.models.chemicaldrift:360: Transfer rates: [[0.00000000e+00 1.75855513e-08 4.62500000e-07 2.88600000e-02 0.00000000e+00] [4.06297347e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00] [9.91290450e-06 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00] [9.91290450e-07 0.00000000e+00 0.00000000e+00 0.00000000e+00 3.16887646e-11] [0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00 0.00000000e+00]] 14:40:06 DEBUG opendrift.models.basemodel:866: to be seeded: 500, already seeded 0 14:40:06 DEBUG opendrift.models.basemodel:884: Released 500 new elements. 14:40:06 WARNING opendrift.models.basemodel:705: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem. 14:40:06 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:06 INFO opendrift.models.basemodel:2011: 2024-04-16 14:40:00.815900 - step 1 of 96 - 500 active elements (0 deactivated) 14:40:06 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:06 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:06 DEBUG opendrift.models.basemodel:2030: 57.546223 <- latitude -> 57.64813 14:40:06 DEBUG opendrift.models.basemodel:2035: 10.507113 <- longitude -> 10.70608 14:40:06 DEBUG opendrift.models.basemodel:2040: -9.98847 <- z -> -0.046954762 14:40:06 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:06 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:06 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:06 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:06 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:06 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 14:00:00 (before) 2024-04-16 15:00:00 (after) 14:40:08 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:08 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:08 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:08 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:08 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:08 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:08 DEBUG opendrift.readers.basereader.structured:291: Fetched env-block (size 36x35x7) for time before (2024-04-16 14:00:00) 14:40:10 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:10 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:10 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:10 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:10 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:10 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:10 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 36x35x7) for time after (2024-04-16 15:00:00) 14:40:10 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 14:00:00) in space (linearNDFast) 14:40:10 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:10 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 15:00:00) in space (linearNDFast) 14:40:10 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:10 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 14:00:00, weight 0.33) and after (2024-04-16 15:00:00, weight 0.67) in time 14:40:10 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:10 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees. 14:40:10 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.4929004930107 and -59.29392585710053 degrees. 14:40:10 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:10 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:10 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:10 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:10 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:10 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:10 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:10 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:10 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:10 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:10 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:10 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:10 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:10 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:10 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:10 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:10 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:10 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:10 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:10 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:10 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.168916 (min) 0.0497232 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0390435 (min) 0.130635 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.164404 (min) 0.115988 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: y_wind: -8.38998 (min) -7.01503 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.53077 (min) 23.882 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.37922 (min) 6.79413 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0854 (min) 30.6024 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00010937 (min) 4.88089e-05 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:10 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:10 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:10 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:10 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:10 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:10 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants /opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/fromnumeric.py:3504: RuntimeWarning: Mean of empty slice. return _methods._mean(a, axis=axis, dtype=dtype, /opt/conda/envs/opendrift/lib/python3.11/site-packages/numpy/core/_methods.py:129: RuntimeWarning: invalid value encountered in divide ret = ret.dtype.type(ret / rcount) 14:40:10 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:10 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1 14:40:10 DEBUG opendrift.models.chemicaldrift:1452: old species: [2] 14:40:10 DEBUG opendrift.models.chemicaldrift:1453: new species: [0] 14:40:10 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[0. 0. 0. 0. 0.] [0. 0. 0. 0. 0.] [1. 0. 0. 0. 0.] [0. 0. 0. 0. 0.] [0. 0. 0. 0. 0.]] 14:40:10 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:10 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:10 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:10 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:10 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05088021336601545 14:40:10 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:10 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:10 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:10 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:10 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:10 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:10 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:10 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 44 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 34 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 35 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:10 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:10 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:10 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:10 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:10 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:10 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:10 INFO opendrift.models.chemicaldrift:1861: partitioning: [450, 0, 47, 3, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:10 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:10 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:10 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:10 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:10 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:10 INFO opendrift.models.basemodel:2011: 2024-04-16 15:10:00.815900 - step 2 of 96 - 500 active elements (0 deactivated) 14:40:10 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:10 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:10 DEBUG opendrift.models.basemodel:2030: 57.54600569977901 <- latitude -> 57.649421821657945 14:40:10 DEBUG opendrift.models.basemodel:2035: 10.506424351247182 <- longitude -> 10.70099470431624 14:40:10 DEBUG opendrift.models.basemodel:2040: -20.258991753537522 <- z -> -0.027087660771218824 14:40:10 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:10 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:10 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:10 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:10 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:10 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 15:00:00 (before) 2024-04-16 16:00:00 (after) 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:13 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:13 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 37x35x7) for time after (2024-04-16 16:00:00) 14:40:13 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 15:00:00) in space (linearNDFast) 14:40:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:13 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 16:00:00) in space (linearNDFast) 14:40:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:13 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 15:00:00, weight 0.83) and after (2024-04-16 16:00:00, weight 0.17) in time 14:40:13 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.493586739781875 and -59.299016359820264 degrees. 14:40:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.493586739781875 and -59.299016359820264 degrees. 14:40:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:13 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.14637 (min) 0.0832131 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0196028 (min) 0.192478 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.265997 (min) 0.0849821 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: y_wind: -8.10627 (min) -6.87863 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.4978 (min) 23.6705 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.0882 (min) 6.7953 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.129 (min) 31.3154 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000162972 (min) 6.23073e-05 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:13 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 7 elements to seafloor. 14:40:13 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:13 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:13 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:13 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:13 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 31 14:40:13 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:13 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:13 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 31. 0.] [ 0. 0. 0. 0. 0.] [ 1. 0. 0. 3. 0.] [ 0. 0. 0. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:13 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:13 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:13 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.04749374894402099 14:40:13 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:13 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:13 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:13 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 35 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:13 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 33 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 34 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:13 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:13 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3 14:40:13 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements 14:40:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:13 INFO opendrift.models.chemicaldrift:1861: partitioning: [419, 0, 47, 34, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:13 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:13 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:13 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:13 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:13 INFO opendrift.models.basemodel:2011: 2024-04-16 15:40:00.815900 - step 3 of 96 - 500 active elements (0 deactivated) 14:40:13 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:13 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:13 DEBUG opendrift.models.basemodel:2030: 57.546920249078205 <- latitude -> 57.652532657376504 14:40:13 DEBUG opendrift.models.basemodel:2035: 10.505759171610718 <- longitude -> 10.697037482590565 14:40:13 DEBUG opendrift.models.basemodel:2040: -22.39605310735671 <- z -> -0.11077515957612394 14:40:13 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:13 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 15:00:00 (before) 2024-04-16 16:00:00 (after) 14:40:13 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 15:00:00) in space (linearNDFast) 14:40:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:13 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 16:00:00) in space (linearNDFast) 14:40:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:13 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 15:00:00, weight 0.33) and after (2024-04-16 16:00:00, weight 0.67) in time 14:40:13 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.494251919761346 and -59.302973580581316 degrees. 14:40:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.494251919761346 and -59.302973580581316 degrees. 14:40:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:13 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:13 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:13 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.150753 (min) 0.110555 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.000850968 (min) 0.195294 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.355087 (min) 0.064889 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: y_wind: -7.92924 (min) -6.72252 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.46516 (min) 23.4459 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.09827 (min) 6.80335 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1005 (min) 31.2915 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000158081 (min) 4.33397e-05 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:13 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:13 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 7 elements to seafloor. 14:40:13 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:13 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:13 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:13 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:13 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 34 14:40:13 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:13 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:13 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 65. 0.] [ 0. 0. 0. 0. 0.] [ 1. 0. 0. 6. 0.] [ 0. 0. 3. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:13 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:13 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:13 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0454401876320077 14:40:13 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:13 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:13 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:13 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:13 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 36 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 33 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:13 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:13 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:13 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:13 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 14 14:40:13 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements 14:40:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:13 INFO opendrift.models.chemicaldrift:1861: partitioning: [385, 0, 58, 57, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:13 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:13 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:13 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:13 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:13 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:13 INFO opendrift.models.basemodel:2011: 2024-04-16 16:10:00.815900 - step 4 of 96 - 500 active elements (0 deactivated) 14:40:13 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:13 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:13 DEBUG opendrift.models.basemodel:2030: 57.54833869338037 <- latitude -> 57.655103081846256 14:40:13 DEBUG opendrift.models.basemodel:2035: 10.505187620368543 <- longitude -> 10.694474762522214 14:40:13 DEBUG opendrift.models.basemodel:2040: -21.61229972309698 <- z -> -0.0411412919228743 14:40:13 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:13 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 16:00:00 (before) 2024-04-16 17:00:00 (after) 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:15 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:15 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 37x34x7) for time after (2024-04-16 17:00:00) 14:40:15 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 16:00:00) in space (linearNDFast) 14:40:15 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:15 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 17:00:00) in space (linearNDFast) 14:40:15 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:15 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 16:00:00, weight 0.83) and after (2024-04-16 17:00:00, weight 0.17) in time 14:40:15 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:15 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49482347120414 and -59.30553629831267 degrees. 14:40:15 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49482347120414 and -59.30553629831267 degrees. 14:40:15 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:15 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:15 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:15 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:15 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:15 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:15 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:15 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:15 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:15 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:15 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:15 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:15 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:15 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:15 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.173234 (min) 0.125748 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0029878 (min) 0.218362 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.334213 (min) 0.104214 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: y_wind: -7.55406 (min) -6.43139 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.42879 (min) 23.2414 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1092 (min) 6.83676 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1449 (min) 31.2663 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000169184 (min) -7.59692e-06 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:15 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 12 elements to seafloor. 14:40:15 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:15 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:15 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:15 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:15 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 27 14:40:15 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:15 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:15 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 92. 0.] [ 0. 0. 0. 0. 0.] [ 1. 0. 0. 9. 0.] [ 0. 0. 17. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:15 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:15 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:15 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.041247299599841226 14:40:15 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:15 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:15 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:15 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 33 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12 14:40:15 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements 14:40:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:15 INFO opendrift.models.chemicaldrift:1861: partitioning: [358, 0, 66, 76, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:15 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:15 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:15 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:40:15 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:15 INFO opendrift.models.basemodel:2011: 2024-04-16 16:40:00.815900 - step 5 of 96 - 500 active elements (0 deactivated) 14:40:15 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:15 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:15 DEBUG opendrift.models.basemodel:2030: 57.54924581188002 <- latitude -> 57.65850785482431 14:40:15 DEBUG opendrift.models.basemodel:2035: 10.504603563296106 <- longitude -> 10.689258401717515 14:40:15 DEBUG opendrift.models.basemodel:2040: -21.099475860595703 <- z -> -0.09464022297122045 14:40:15 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:15 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:15 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:15 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:15 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 16:00:00 (before) 2024-04-16 17:00:00 (after) 14:40:15 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 16:00:00) in space (linearNDFast) 14:40:15 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:15 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 17:00:00) in space (linearNDFast) 14:40:15 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:15 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 16:00:00, weight 0.33) and after (2024-04-16 17:00:00, weight 0.67) in time 14:40:15 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:15 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49540752405423 and -59.310752651502504 degrees. 14:40:15 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49540752405423 and -59.310752651502504 degrees. 14:40:15 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:15 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:15 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:15 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:15 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:15 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:15 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:15 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:15 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:15 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:15 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:15 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:15 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:15 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:15 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:15 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:15 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:15 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.198159 (min) 0.101507 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.00422591 (min) 0.239097 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.0972646 (min) 0.263533 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: y_wind: -6.78052 (min) -5.5312 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.39276 (min) 23.1414 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.12184 (min) 6.8852 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.145 (min) 31.2429 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000187968 (min) -8.35576e-06 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:15 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:15 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 8 elements to seafloor. 14:40:15 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:15 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:15 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:15 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:15 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 33 14:40:15 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:15 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 0 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:15 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 124. 0.] [ 0. 0. 0. 0. 0.] [ 2. 0. 0. 13. 0.] [ 0. 0. 29. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:15 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:15 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:15 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.03323560729960064 14:40:15 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:15 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:15 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:15 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:15 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:15 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:15 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16 14:40:15 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:15 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements 14:40:15 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:15 INFO opendrift.models.chemicaldrift:1861: partitioning: [327, 0, 78, 95, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:15 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:15 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:15 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:15 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:15 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:15 INFO opendrift.models.basemodel:2011: 2024-04-16 17:10:00.815900 - step 6 of 96 - 500 active elements (0 deactivated) 14:40:15 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:15 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:15 DEBUG opendrift.models.basemodel:2030: 57.550950576177854 <- latitude -> 57.66237216082185 14:40:15 DEBUG opendrift.models.basemodel:2035: 10.504037108550248 <- longitude -> 10.683515560284127 14:40:15 DEBUG opendrift.models.basemodel:2040: -21.42904979245295 <- z -> -0.021088672634066108 14:40:15 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:15 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:15 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:15 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:15 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:15 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 17:00:00 (before) 2024-04-16 18:00:00 (after) 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:17 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:17 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 38x34x7) for time after (2024-04-16 18:00:00) 14:40:17 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 17:00:00) in space (linearNDFast) 14:40:17 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:17 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 18:00:00) in space (linearNDFast) 14:40:17 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:17 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 17:00:00, weight 0.83) and after (2024-04-16 18:00:00, weight 0.17) in time 14:40:17 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:17 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49597397951776 and -59.31649550055699 degrees. 14:40:17 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49597397951776 and -59.31649550055699 degrees. 14:40:17 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:17 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:17 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:17 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:17 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:17 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:17 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:17 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:17 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:17 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:17 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:17 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:17 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:17 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:17 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.184766 (min) 0.120784 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0139926 (min) 0.235568 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: x_wind: 0.153754 (min) 0.582963 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: y_wind: -5.884 (min) -4.65316 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.35411 (min) 22.7542 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1344 (min) 6.87417 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1533 (min) 31.2254 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000231197 (min) -2.60824e-06 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:17 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:17 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:17 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:17 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:17 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:17 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 26 14:40:17 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0] 14:40:17 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0 3 3 3 3 3 3] 14:40:17 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 149. 0.] [ 0. 0. 0. 0. 0.] [ 3. 0. 0. 16. 0.] [ 0. 0. 45. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:17 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:17 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:17 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0251130321501379 14:40:17 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:17 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:17 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:17 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 13 14:40:17 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 13 elements 14:40:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:17 INFO opendrift.models.chemicaldrift:1861: partitioning: [303, 0, 81, 116, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:17 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:17 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:17 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 7 elements to seafloor. 14:40:17 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:17 INFO opendrift.models.basemodel:2011: 2024-04-16 17:40:00.815900 - step 7 of 96 - 500 active elements (0 deactivated) 14:40:17 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:17 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:17 DEBUG opendrift.models.basemodel:2030: 57.55270971077309 <- latitude -> 57.66608537042569 14:40:17 DEBUG opendrift.models.basemodel:2035: 10.503482940511903 <- longitude -> 10.684658342327413 14:40:17 DEBUG opendrift.models.basemodel:2040: -21.532453536987305 <- z -> -0.1482161265097507 14:40:17 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:17 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:17 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:17 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:17 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 17:00:00 (before) 2024-04-16 18:00:00 (after) 14:40:17 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 17:00:00) in space (linearNDFast) 14:40:17 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:17 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 18:00:00) in space (linearNDFast) 14:40:17 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:17 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 17:00:00, weight 0.33) and after (2024-04-16 18:00:00, weight 0.67) in time 14:40:17 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:17 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49652815172528 and -59.31535271542096 degrees. 14:40:17 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49652815172528 and -59.31535271542096 degrees. 14:40:17 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:17 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:17 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:17 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:17 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:17 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:17 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:17 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:17 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:17 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:17 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:17 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:17 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:17 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:17 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:17 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:17 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:17 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.176096 (min) 0.119608 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0232029 (min) 0.235614 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: x_wind: 0.510873 (min) 1.10625 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.8656 (min) -3.86367 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.31112 (min) 22.4569 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14679 (min) 6.86722 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1697 (min) 31.2488 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00026697 (min) 1.57711e-05 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:17 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:17 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:17 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:17 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:17 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:17 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:17 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 19 14:40:17 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:17 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:17 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 168. 0.] [ 0. 0. 0. 0. 0.] [ 3. 0. 0. 25. 0.] [ 0. 0. 58. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:17 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:17 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:17 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017799629072142078 14:40:17 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:17 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:17 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:17 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:17 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5 14:40:17 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:17 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements 14:40:17 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:17 INFO opendrift.models.chemicaldrift:1861: partitioning: [284, 0, 82, 134, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:17 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:17 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:17 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:17 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:17 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:17 INFO opendrift.models.basemodel:2011: 2024-04-16 18:10:00.815900 - step 8 of 96 - 500 active elements (0 deactivated) 14:40:17 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:17 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:17 DEBUG opendrift.models.basemodel:2030: 57.55400570014707 <- latitude -> 57.66989337539988 14:40:17 DEBUG opendrift.models.basemodel:2035: 10.502899782704995 <- longitude -> 10.682096642781081 14:40:17 DEBUG opendrift.models.basemodel:2040: -21.532453536987305 <- z -> -0.14670438903326666 14:40:17 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:17 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:17 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:17 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:17 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:17 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 18:00:00 (before) 2024-04-16 19:00:00 (after) 14:40:18 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:18 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:18 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:18 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:18 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:18 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:18 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 39x33x7) for time after (2024-04-16 19:00:00) 14:40:18 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 18:00:00) in space (linearNDFast) 14:40:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:18 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 19:00:00) in space (linearNDFast) 14:40:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:18 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 18:00:00, weight 0.83) and after (2024-04-16 19:00:00, weight 0.17) in time 14:40:18 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:18 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49711130256403 and -59.31791440566297 degrees. 14:40:18 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49711130256403 and -59.31791440566297 degrees. 14:40:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:18 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:18 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:18 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:18 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:18 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:18 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:18 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:18 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:18 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.135315 (min) 0.115455 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0123563 (min) 0.225206 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: x_wind: 0.931891 (min) 1.6408 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.99812 (min) -3.07429 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.26138 (min) 22.3223 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.15879 (min) 6.8102 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1684 (min) 31.2395 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000276139 (min) 3.8163e-05 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:18 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:18 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:18 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:18 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:18 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:18 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:18 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 18 14:40:18 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0] 14:40:18 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 0 3 3 3 3 3 0 3 3 3 3 3 3] 14:40:18 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 184. 0.] [ 0. 0. 0. 0. 0.] [ 5. 0. 0. 29. 0.] [ 0. 0. 63. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:18 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:18 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:18 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013056295910898531 14:40:18 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:18 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:18 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:18 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:18 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:18 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:18 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:18 INFO opendrift.models.chemicaldrift:1861: partitioning: [270, 0, 76, 154, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:18 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:18 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:18 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:18 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:18 INFO opendrift.models.basemodel:2011: 2024-04-16 18:40:00.815900 - step 9 of 96 - 500 active elements (0 deactivated) 14:40:18 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:18 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:18 DEBUG opendrift.models.basemodel:2030: 57.554205406607075 <- latitude -> 57.673049634982576 14:40:18 DEBUG opendrift.models.basemodel:2035: 10.502255176567777 <- longitude -> 10.68416824613043 14:40:18 DEBUG opendrift.models.basemodel:2040: -21.532453536987305 <- z -> -0.0859427501751171 14:40:18 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:18 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 18:00:00 (before) 2024-04-16 19:00:00 (after) 14:40:18 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 18:00:00) in space (linearNDFast) 14:40:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:19 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 19:00:00) in space (linearNDFast) 14:40:19 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:19 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 18:00:00, weight 0.33) and after (2024-04-16 19:00:00, weight 0.67) in time 14:40:19 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:19 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49775591622031 and -59.31584279293999 degrees. 14:40:19 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49775591622031 and -59.31584279293999 degrees. 14:40:19 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:19 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:19 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:19 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:19 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:19 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:19 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:19 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:19 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:19 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:19 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:19 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:19 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:19 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:19 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:19 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:19 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:19 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:19 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:19 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:19 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.117959 (min) 0.105807 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.000519041 (min) 0.20131 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: x_wind: 1.4409 (min) 2.18386 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.6147 (min) -2.29358 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.20924 (min) 22.3643 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.15895 (min) 6.82096 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1627 (min) 31.2367 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000301187 (min) 5.85367e-05 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:19 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:19 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:19 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:19 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:19 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:19 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:19 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 17 14:40:19 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:19 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:19 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 201. 0.] [ 0. 0. 0. 0. 0.] [ 5. 0. 0. 33. 0.] [ 0. 0. 63. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:19 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:19 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:19 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:19 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:19 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011114665111420527 14:40:19 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:19 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:19 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:19 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:19 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:19 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:40:19 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:19 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:40:19 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:19 INFO opendrift.models.chemicaldrift:1861: partitioning: [253, 0, 68, 179, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:19 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:19 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:19 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:19 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:19 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:19 INFO opendrift.models.basemodel:2011: 2024-04-16 19:10:00.815900 - step 10 of 96 - 500 active elements (0 deactivated) 14:40:19 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:19 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:19 DEBUG opendrift.models.basemodel:2030: 57.554754916026475 <- latitude -> 57.6759872289277 14:40:19 DEBUG opendrift.models.basemodel:2035: 10.50159214752791 <- longitude -> 10.686108109006693 14:40:19 DEBUG opendrift.models.basemodel:2040: -21.532453536987305 <- z -> -0.08449979842103518 14:40:19 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:19 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:19 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:19 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:19 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:19 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 19:00:00 (before) 2024-04-16 20:00:00 (after) 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:20 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:20 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 39x34x7) for time after (2024-04-16 20:00:00) 14:40:20 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 19:00:00) in space (linearNDFast) 14:40:20 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:20 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 20:00:00) in space (linearNDFast) 14:40:20 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:20 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 19:00:00, weight 0.83) and after (2024-04-16 20:00:00, weight 0.17) in time 14:40:20 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:20 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49841893022094 and -59.31390295635498 degrees. 14:40:20 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.49841893022094 and -59.31390295635498 degrees. 14:40:20 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:20 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:20 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:20 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:20 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:20 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:20 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:20 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:20 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:20 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:20 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:20 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:20 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:20 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:20 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.112358 (min) 0.0951762 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0166974 (min) 0.182731 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: x_wind: 2.02029 (min) 2.59432 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.282 (min) -1.92894 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.16337 (min) 22.4153 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.15528 (min) 6.82507 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1762 (min) 31.2355 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000275524 (min) 7.76019e-05 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:20 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:20 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:20 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:20 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:20 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:20 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 16 14:40:20 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0] 14:40:20 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0 3 3 3 3 3 3 3 0 3] 14:40:20 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 215. 0.] [ 0. 0. 0. 0. 0.] [ 7. 0. 0. 42. 0.] [ 0. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:20 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:20 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:20 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011729050359331073 14:40:20 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:20 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:20 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:20 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:20 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:20 INFO opendrift.models.chemicaldrift:1861: partitioning: [241, 0, 59, 200, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:20 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:20 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:20 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:20 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:20 INFO opendrift.models.basemodel:2011: 2024-04-16 19:40:00.815900 - step 11 of 96 - 500 active elements (0 deactivated) 14:40:20 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:20 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:20 DEBUG opendrift.models.basemodel:2030: 57.55523908712952 <- latitude -> 57.67866142479782 14:40:20 DEBUG opendrift.models.basemodel:2035: 10.500914153535708 <- longitude -> 10.687790274880067 14:40:20 DEBUG opendrift.models.basemodel:2040: -21.562912475673365 <- z -> -0.0650632800034886 14:40:20 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:20 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:20 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:20 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:20 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 19:00:00 (before) 2024-04-16 20:00:00 (after) 14:40:20 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 19:00:00) in space (linearNDFast) 14:40:20 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:20 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 20:00:00) in space (linearNDFast) 14:40:20 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:20 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 19:00:00, weight 0.33) and after (2024-04-16 20:00:00, weight 0.67) in time 14:40:20 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:20 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.499096932704624 and -59.31222078430493 degrees. 14:40:20 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.499096932704624 and -59.31222078430493 degrees. 14:40:20 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:20 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:20 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:20 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:20 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:20 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:20 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:20 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:20 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:20 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:20 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:20 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:20 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:20 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:20 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:20 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:20 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:20 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0816786 (min) 0.0820583 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0350727 (min) 0.170276 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: x_wind: 2.20367 (min) 3.25225 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.39823 (min) -2.06013 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.11877 (min) 22.4682 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1516 (min) 6.80088 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.1805 (min) 31.2372 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000266518 (min) 9.60658e-05 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:20 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:20 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 6 elements to seafloor. 14:40:20 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:20 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:20 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:20 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:20 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 16 14:40:20 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:20 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:20 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 229. 0.] [ 0. 0. 0. 0. 0.] [ 8. 0. 0. 49. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:20 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:20 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:20 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01584639454092226 14:40:20 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:20 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:20 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:20 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:20 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:20 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:20 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:20 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:20 INFO opendrift.models.chemicaldrift:1861: partitioning: [229, 0, 55, 216, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:20 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:20 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:20 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:20 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:20 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:20 INFO opendrift.models.basemodel:2011: 2024-04-16 20:10:00.815900 - step 12 of 96 - 500 active elements (0 deactivated) 14:40:20 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:20 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:20 DEBUG opendrift.models.basemodel:2030: 57.55540670442204 <- latitude -> 57.68109328192293 14:40:20 DEBUG opendrift.models.basemodel:2035: 10.500179497869635 <- longitude -> 10.689029746648536 14:40:20 DEBUG opendrift.models.basemodel:2040: -22.468204498291016 <- z -> -0.006024906149644904 14:40:20 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:20 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:20 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:20 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:20 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:20 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 20:00:00 (before) 2024-04-16 21:00:00 (after) 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:23 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:23 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 40x34x7) for time after (2024-04-16 21:00:00) 14:40:23 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 20:00:00) in space (linearNDFast) 14:40:23 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:23 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 21:00:00) in space (linearNDFast) 14:40:23 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:23 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 20:00:00, weight 0.83) and after (2024-04-16 21:00:00, weight 0.17) in time 14:40:23 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:23 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.499831588183454 and -59.31098130612498 degrees. 14:40:23 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.499831588183454 and -59.31098130612498 degrees. 14:40:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:23 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:23 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:23 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:23 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0904245 (min) 0.0664575 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0600037 (min) 0.195426 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: x_wind: 1.60859 (min) 3.56781 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.5732 (min) -2.16498 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.07224 (min) 22.4873 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14914 (min) 6.86641 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0234 (min) 31.2386 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000248077 (min) 0.000116484 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:23 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:23 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:23 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:23 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:23 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:23 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:23 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 14 14:40:23 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2 0 0 0 0 0 0 0] 14:40:23 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0 3 3 3 3 3 3 3] 14:40:23 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 242. 0.] [ 0. 0. 0. 0. 0.] [ 9. 0. 0. 52. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:23 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:23 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:23 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:23 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:23 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01705073780013528 14:40:23 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:23 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:23 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:23 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:23 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:23 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:23 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:23 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:23 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:23 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:23 INFO opendrift.models.chemicaldrift:1861: partitioning: [217, 0, 52, 231, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:23 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:23 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:23 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:23 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:23 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:23 INFO opendrift.models.basemodel:2011: 2024-04-16 20:40:00.815900 - step 13 of 96 - 500 active elements (0 deactivated) 14:40:23 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:23 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:23 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.68328946786186 14:40:23 DEBUG opendrift.models.basemodel:2035: 10.499431054504246 <- longitude -> 10.689029746648536 14:40:23 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.004781729719956274 14:40:23 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:23 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 20:00:00 (before) 2024-04-16 21:00:00 (after) 14:40:23 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 20:00:00) in space (linearNDFast) 14:40:23 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:23 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 21:00:00) in space (linearNDFast) 14:40:23 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:23 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 20:00:00, weight 0.33) and after (2024-04-16 21:00:00, weight 0.67) in time 14:40:23 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:23 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50058002744066 and -59.31098130612498 degrees. 14:40:23 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50058002744066 and -59.31098130612498 degrees. 14:40:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:23 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:23 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:23 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:23 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:23 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:23 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0872239 (min) 0.0600855 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0745607 (min) 0.206082 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.302393 (min) 2.40233 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.92002 (min) -1.8305 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 9.02789 (min) 22.4873 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14912 (min) 6.88914 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.9006 (min) 31.239 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000201036 (min) 0.00012858 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:23 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:23 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:23 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:23 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:23 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:23 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:23 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:23 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11 14:40:23 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0] 14:40:23 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3] 14:40:23 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 253. 0.] [ 0. 0. 0. 0. 0.] [ 9. 0. 0. 54. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:23 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:23 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:23 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:23 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:23 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014807601502698678 14:40:23 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:23 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:23 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:23 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:23 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:23 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:23 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:23 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:23 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:23 INFO opendrift.models.chemicaldrift:1861: partitioning: [206, 0, 52, 242, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:23 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:23 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:23 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:23 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:23 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:23 INFO opendrift.models.basemodel:2011: 2024-04-16 21:10:00.815900 - step 14 of 96 - 500 active elements (0 deactivated) 14:40:23 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:23 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:23 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.684497044090115 14:40:23 DEBUG opendrift.models.basemodel:2035: 10.498802283233992 <- longitude -> 10.689029746648536 14:40:23 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.022507014278693727 14:40:23 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:23 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 21:00:00 (before) 2024-04-16 22:00:00 (after) 14:40:24 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:24 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:24 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:24 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:24 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:24 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:24 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 41x34x7) for time after (2024-04-16 22:00:00) 14:40:24 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 21:00:00) in space (linearNDFast) 14:40:24 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:24 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 22:00:00) in space (linearNDFast) 14:40:24 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:24 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 21:00:00, weight 0.83) and after (2024-04-16 22:00:00, weight 0.17) in time 14:40:24 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:24 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.5012088063785 and -59.31098130612498 degrees. 14:40:24 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.5012088063785 and -59.31098130612498 degrees. 14:40:24 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:24 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:24 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:24 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:24 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:24 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:24 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:24 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:24 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:24 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:24 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:24 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:24 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:24 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:24 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:24 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:24 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:24 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:24 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:24 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:24 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0848903 (min) 0.0761289 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0840521 (min) 0.201748 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.13965 (min) 1.28717 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.95996 (min) -0.950915 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1491 (min) 6.8676 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.9001 (min) 31.2387 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000173091 (min) 0.000152141 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:24 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:24 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:24 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:25 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:25 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:25 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:25 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:25 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 16 14:40:25 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2] 14:40:25 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0] 14:40:25 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 268. 0.] [ 0. 0. 0. 0. 0.] [ 10. 0. 0. 54. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:25 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:25 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:25 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:25 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:25 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012440332548410182 14:40:25 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:25 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:25 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:25 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:25 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:25 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:25 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:25 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:25 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:25 INFO opendrift.models.chemicaldrift:1861: partitioning: [192, 0, 48, 260, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:25 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:25 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:25 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:25 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:25 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:25 INFO opendrift.models.basemodel:2011: 2024-04-16 21:40:00.815900 - step 15 of 96 - 500 active elements (0 deactivated) 14:40:25 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:25 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:25 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.68636492437909 14:40:25 DEBUG opendrift.models.basemodel:2035: 10.498802283233992 <- longitude -> 10.689029746648535 14:40:25 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.03792471910220495 14:40:25 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:25 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:25 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:25 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:25 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 21:00:00 (before) 2024-04-16 22:00:00 (after) 14:40:25 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 21:00:00) in space (linearNDFast) 14:40:25 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:25 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 22:00:00) in space (linearNDFast) 14:40:25 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:25 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 21:00:00, weight 0.33) and after (2024-04-16 22:00:00, weight 0.67) in time 14:40:25 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:25 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.5012088063785 and -59.310981311414125 degrees. 14:40:25 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.5012088063785 and -59.310981311414125 degrees. 14:40:25 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:25 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:25 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:25 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:25 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:25 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:25 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:25 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:25 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:25 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:25 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:25 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:25 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:25 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:25 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:25 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:25 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:25 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:25 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:25 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:25 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0900504 (min) 0.0710115 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0834329 (min) 0.185584 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.59546 (min) 0.640738 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.2163 (min) -0.782954 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14908 (min) 6.81973 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0512 (min) 31.2372 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000153088 (min) 0.000199048 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:25 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:25 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:25 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:25 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:25 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:25 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:25 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:25 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 13 14:40:25 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:25 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:25 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 281. 0.] [ 0. 0. 0. 0. 0.] [ 10. 0. 0. 57. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:25 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:25 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:25 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:25 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:25 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.009788436331661585 14:40:25 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:25 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:25 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:25 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:25 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:25 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:25 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:25 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:25 INFO opendrift.models.chemicaldrift:1861: partitioning: [179, 0, 48, 273, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:25 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:25 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:25 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:25 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:25 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:25 INFO opendrift.models.basemodel:2011: 2024-04-16 22:10:00.815900 - step 16 of 96 - 500 active elements (0 deactivated) 14:40:25 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:25 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:25 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.68810216585476 14:40:25 DEBUG opendrift.models.basemodel:2035: 10.498802283233992 <- longitude -> 10.689029746648531 14:40:25 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.18950335336030671 14:40:25 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:25 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:25 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:25 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:25 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:25 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 22:00:00 (before) 2024-04-16 23:00:00 (after) 14:40:26 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:26 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:26 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:26 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:26 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:26 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:26 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 41x34x7) for time after (2024-04-16 23:00:00) 14:40:26 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 22:00:00) in space (linearNDFast) 14:40:26 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:26 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 23:00:00) in space (linearNDFast) 14:40:26 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:26 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 22:00:00, weight 0.83) and after (2024-04-16 23:00:00, weight 0.17) in time 14:40:26 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:26 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.5012088063785 and -59.310981311414125 degrees. 14:40:26 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.5012088063785 and -59.310981311414125 degrees. 14:40:27 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:27 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:27 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:27 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:27 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:27 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:27 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:27 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:27 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:27 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:27 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:27 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:27 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:27 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:27 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:27 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0974721 (min) 0.0734042 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0784733 (min) 0.188095 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.41529 (min) -0.0183628 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: y_wind: -2.57705 (min) -0.435338 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1451 (min) 6.80461 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0467 (min) 31.2367 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000129327 (min) 0.000235039 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:27 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:27 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:27 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:27 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:27 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:27 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:27 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10 14:40:27 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0] 14:40:27 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3] 14:40:27 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 291. 0.] [ 0. 0. 0. 0. 0.] [ 10. 0. 0. 57. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:27 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:27 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:27 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01465757117361979 14:40:27 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:27 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:27 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:27 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:27 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:27 INFO opendrift.models.chemicaldrift:1861: partitioning: [169, 0, 47, 284, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:27 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:27 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:27 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:27 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:27 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:27 INFO opendrift.models.basemodel:2011: 2024-04-16 22:40:00.815900 - step 17 of 96 - 500 active elements (0 deactivated) 14:40:27 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:27 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:27 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.68982407875462 14:40:27 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.689029746648531 14:40:27 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.2685422444964203 14:40:27 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:27 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:27 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:27 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:27 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 22:00:00 (before) 2024-04-16 23:00:00 (after) 14:40:27 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 22:00:00) in space (linearNDFast) 14:40:27 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:27 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-16 23:00:00) in space (linearNDFast) 14:40:27 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:27 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 22:00:00, weight 0.33) and after (2024-04-16 23:00:00, weight 0.67) in time 14:40:27 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:27 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.310981311414125 degrees. 14:40:27 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.310981311414125 degrees. 14:40:27 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:27 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:27 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:27 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:27 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:27 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:27 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:27 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:27 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:27 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:27 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:27 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:27 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:27 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:27 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:27 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:27 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:27 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.112226 (min) 0.0771277 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0648507 (min) 0.190713 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.2557 (min) -1.14823 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.82538 (min) -0.917938 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.13971 (min) 6.78888 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0504 (min) 31.2381 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000109169 (min) 0.000234794 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:27 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:27 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:27 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:27 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:27 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:27 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:27 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:27 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:40:27 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0 0 0 0] 14:40:27 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 3 3 3] 14:40:27 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 296. 0.] [ 0. 0. 0. 0. 0.] [ 11. 0. 0. 58. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:27 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:27 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:27 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014241987762249076 14:40:27 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:27 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:27 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:27 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:27 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:27 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:27 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:27 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:27 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:27 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:27 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:27 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:27 INFO opendrift.models.chemicaldrift:1861: partitioning: [165, 0, 44, 291, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:27 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:27 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:27 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:27 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:27 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:27 INFO opendrift.models.basemodel:2011: 2024-04-16 23:10:00.815900 - step 18 of 96 - 500 active elements (0 deactivated) 14:40:27 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:27 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:27 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.69158733755413 14:40:27 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.689029746648531 14:40:27 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.037755183953120386 14:40:27 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:27 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:27 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:27 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:27 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:27 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 23:00:00 (before) 2024-04-17 00:00:00 (after) 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:29 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:29 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 42x34x7) for time after (2024-04-17 00:00:00) 14:40:29 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 23:00:00) in space (linearNDFast) 14:40:29 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:29 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 00:00:00) in space (linearNDFast) 14:40:29 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:29 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 23:00:00, weight 0.83) and after (2024-04-17 00:00:00, weight 0.17) in time 14:40:29 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:29 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.310981311414125 degrees. 14:40:29 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.310981311414125 degrees. 14:40:29 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:29 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:29 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:29 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:29 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:29 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:29 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:29 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:29 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:29 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:29 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:29 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:29 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:29 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:29 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.12274 (min) 0.0802232 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0478761 (min) 0.191014 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.13297 (min) -2.13029 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.5633 (min) -0.883903 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1351 (min) 6.76678 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0444 (min) 31.2515 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -9.35633e-05 (min) 0.000231832 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:29 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:29 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:29 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:29 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:29 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:29 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 16 14:40:29 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0] 14:40:29 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3] 14:40:29 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 312. 0.] [ 0. 0. 0. 0. 0.] [ 11. 0. 0. 60. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:29 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:29 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:29 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013944805309705512 14:40:29 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:29 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:29 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:29 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:29 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:29 INFO opendrift.models.chemicaldrift:1861: partitioning: [149, 0, 42, 309, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:29 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:29 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:29 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:29 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:29 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:29 INFO opendrift.models.basemodel:2011: 2024-04-16 23:40:00.815900 - step 19 of 96 - 500 active elements (0 deactivated) 14:40:29 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:29 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:29 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.693519801082005 14:40:29 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.689029746648531 14:40:29 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.27065922724023594 14:40:29 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:29 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:29 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:29 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:29 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-16 23:00:00 (before) 2024-04-17 00:00:00 (after) 14:40:29 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-16 23:00:00) in space (linearNDFast) 14:40:29 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:29 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 00:00:00) in space (linearNDFast) 14:40:29 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:29 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-16 23:00:00, weight 0.33) and after (2024-04-17 00:00:00, weight 0.67) in time 14:40:29 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:29 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.310981311414125 degrees. 14:40:29 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.310981311414125 degrees. 14:40:29 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:29 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:29 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:29 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:29 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:29 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:29 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:29 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:29 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:29 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:29 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:29 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:29 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:29 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:29 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:29 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:29 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.124789 (min) 0.0868589 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0242114 (min) 0.191511 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.35413 (min) -2.8099 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.72068 (min) -1.08064 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.13204 (min) 6.75515 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0452 (min) 31.2661 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -6.23325e-05 (min) 0.000214544 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:29 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:29 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:29 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:29 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:29 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:29 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:29 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11 14:40:29 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 0 0 0 0 0 0 0] 14:40:29 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 3 3 3 3 3 3 3] 14:40:29 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 322. 0.] [ 0. 0. 0. 0. 0.] [ 12. 0. 0. 62. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:29 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:29 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:29 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.015306670529169892 14:40:29 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:29 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:29 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:29 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:29 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:29 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:29 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:29 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:29 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:29 INFO opendrift.models.chemicaldrift:1861: partitioning: [140, 0, 39, 321, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:29 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:29 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:29 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:29 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:29 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:29 INFO opendrift.models.basemodel:2011: 2024-04-17 00:10:00.815900 - step 20 of 96 - 500 active elements (0 deactivated) 14:40:29 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:29 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:29 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.69570411093557 14:40:29 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.68902974664853 14:40:29 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.08265744364048266 14:40:29 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:29 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:29 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:29 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:29 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:29 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 00:00:00 (before) 2024-04-17 01:00:00 (after) 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:32 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:32 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 43x34x7) for time after (2024-04-17 01:00:00) 14:40:32 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 00:00:00) in space (linearNDFast) 14:40:32 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:32 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 01:00:00) in space (linearNDFast) 14:40:32 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:32 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 00:00:00, weight 0.83) and after (2024-04-17 01:00:00, weight 0.17) in time 14:40:32 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:32 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.31098130612498 degrees. 14:40:32 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.31098130612498 degrees. 14:40:32 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:32 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:32 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:32 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:32 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:32 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:32 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:32 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:32 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:32 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:32 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:32 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:32 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:32 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:32 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.123582 (min) 0.0903067 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.00422162 (min) 0.221055 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.59219 (min) -3.34577 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.84241 (min) -1.18427 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.12958 (min) 6.82706 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6231 (min) 31.2786 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -3.05707e-05 (min) 0.00019667 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:32 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:32 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:32 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:32 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:32 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9 14:40:32 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 2 0 0] 14:40:32 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0 3 3] 14:40:32 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 330. 0.] [ 0. 0. 0. 0. 0.] [ 13. 0. 0. 64. 0.] [ 1. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:32 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:32 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:32 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.016853997750873827 14:40:32 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:32 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:32 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:32 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:32 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:32 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:32 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:32 INFO opendrift.models.chemicaldrift:1861: partitioning: [133, 0, 34, 333, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:32 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:32 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:32 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:32 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:32 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:32 INFO opendrift.models.basemodel:2011: 2024-04-17 00:40:00.815900 - step 21 of 96 - 500 active elements (0 deactivated) 14:40:32 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:32 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:32 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.69829001234783 14:40:32 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.68902974664853 14:40:32 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.139836497129343 14:40:32 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:32 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:32 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:32 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:32 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 00:00:00 (before) 2024-04-17 01:00:00 (after) 14:40:32 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 00:00:00) in space (linearNDFast) 14:40:32 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:32 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 01:00:00) in space (linearNDFast) 14:40:32 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:32 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 00:00:00, weight 0.33) and after (2024-04-17 01:00:00, weight 0.67) in time 14:40:32 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:32 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.31098130612498 degrees. 14:40:32 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284491 and -59.31098130612498 degrees. 14:40:32 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:32 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:32 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:32 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:32 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:32 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:32 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:32 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:32 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:32 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:32 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:32 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:32 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:32 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:32 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:32 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:32 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:32 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.113861 (min) 0.117474 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0248866 (min) 0.238967 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.77371 (min) -3.99819 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.6487 (min) -1.13554 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.12834 (min) 6.78653 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.8116 (min) 31.2867 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -6.59237e-05 (min) 0.000180295 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:32 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:32 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:32 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:32 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:32 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:32 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7 14:40:32 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 3] 14:40:32 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 0] 14:40:32 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 336. 0.] [ 0. 0. 0. 0. 0.] [ 13. 0. 0. 68. 0.] [ 2. 0. 64. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:32 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:32 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:32 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017955802397564086 14:40:32 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:32 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:32 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:32 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:32 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:40:32 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:32 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:40:32 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:32 INFO opendrift.models.chemicaldrift:1861: partitioning: [128, 0, 33, 339, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:32 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:32 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:32 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:32 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:32 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:32 INFO opendrift.models.basemodel:2011: 2024-04-17 01:10:00.815900 - step 22 of 96 - 500 active elements (0 deactivated) 14:40:32 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:32 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:32 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.70134789405646 14:40:32 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.68902974664853 14:40:32 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> -0.25162648155681394 14:40:32 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:32 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:32 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:32 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:32 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:32 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 01:00:00 (before) 2024-04-17 02:00:00 (after) 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:34 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:34 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 44x34x7) for time after (2024-04-17 02:00:00) 14:40:34 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 01:00:00) in space (linearNDFast) 14:40:34 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:34 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 02:00:00) in space (linearNDFast) 14:40:34 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:34 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 01:00:00, weight 0.83) and after (2024-04-17 02:00:00, weight 0.17) in time 14:40:34 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:34 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880637849 and -59.31098130612498 degrees. 14:40:34 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880637849 and -59.31098130612498 degrees. 14:40:34 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:34 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:34 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:34 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:34 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:34 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:34 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:34 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:34 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:34 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:34 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:34 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:34 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:34 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:34 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.104564 (min) 0.110451 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0388485 (min) 0.258524 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: x_wind: -5.01554 (min) -4.52381 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.21853 (min) -0.695234 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.12863 (min) 6.77073 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.8181 (min) 31.2919 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -8.41188e-05 (min) 0.000183556 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:34 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:34 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:34 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:34 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:34 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8 14:40:34 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0] 14:40:34 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3] 14:40:34 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 344. 0.] [ 0. 0. 0. 0. 0.] [ 13. 0. 0. 70. 0.] [ 2. 0. 65. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:34 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:34 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:34 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0191270017201856 14:40:34 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:34 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:34 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:34 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:34 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 27 14:40:34 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 27 elements 14:40:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:34 INFO opendrift.models.chemicaldrift:1861: partitioning: [120, 0, 57, 323, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:34 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:34 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:34 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:34 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:34 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:34 INFO opendrift.models.basemodel:2011: 2024-04-17 01:40:00.815900 - step 23 of 96 - 500 active elements (0 deactivated) 14:40:34 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:34 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:34 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.70526228071288 14:40:34 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.68902974664853 14:40:34 DEBUG opendrift.models.basemodel:2040: -22.487253189086914 <- z -> 0.0 14:40:34 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:34 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:34 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:34 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:34 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 01:00:00 (before) 2024-04-17 02:00:00 (after) 14:40:34 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 01:00:00) in space (linearNDFast) 14:40:34 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:34 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 02:00:00) in space (linearNDFast) 14:40:34 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:34 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 01:00:00, weight 0.33) and after (2024-04-17 02:00:00, weight 0.67) in time 14:40:34 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:34 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284487 and -59.31098130612498 degrees. 14:40:34 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284487 and -59.31098130612498 degrees. 14:40:34 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:34 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:34 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:34 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:34 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:34 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:34 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:34 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:34 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:34 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:34 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:34 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:34 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:34 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:34 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:34 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:34 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:34 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0978764 (min) 0.139607 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0551376 (min) 0.281868 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: x_wind: -5.15986 (min) -4.76373 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: y_wind: -0.562197 (min) 0.324218 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.4873 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.13199 (min) 6.72377 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0068 (min) 31.2962 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -4.06039e-05 (min) 0.000173295 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:34 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:34 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:34 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:34 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:34 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:34 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:40:34 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0] 14:40:34 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3] 14:40:34 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 347. 0.] [ 0. 0. 0. 0. 0.] [ 13. 0. 0. 73. 0.] [ 2. 0. 92. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:34 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:34 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:34 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01939158127877535 14:40:34 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:34 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:34 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:34 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:34 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:34 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 142 14:40:34 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:34 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 142 elements 14:40:34 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:34 INFO opendrift.models.chemicaldrift:1861: partitioning: [117, 0, 192, 191, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:34 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:34 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:34 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:34 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:34 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:34 INFO opendrift.models.basemodel:2011: 2024-04-17 02:10:00.815900 - step 24 of 96 - 500 active elements (0 deactivated) 14:40:34 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:34 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:34 DEBUG opendrift.models.basemodel:2030: 57.55540670442205 <- latitude -> 57.7098177581329 14:40:34 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.686555939390871 14:40:34 DEBUG opendrift.models.basemodel:2040: -22.05147568798603 <- z -> -0.05695344116428332 14:40:34 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:34 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:34 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:34 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:34 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:34 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 02:00:00 (before) 2024-04-17 03:00:00 (after) 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:36 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:36 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 45x34x7) for time after (2024-04-17 03:00:00) 14:40:36 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 02:00:00) in space (linearNDFast) 14:40:36 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:36 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 03:00:00) in space (linearNDFast) 14:40:36 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:36 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 02:00:00, weight 0.83) and after (2024-04-17 03:00:00, weight 0.17) in time 14:40:36 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:36 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284487 and -59.31345511310089 degrees. 14:40:36 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284487 and -59.31345511310089 degrees. 14:40:36 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:36 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:36 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:36 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:36 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:36 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:36 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:36 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:36 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:36 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:36 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:36 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:36 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:36 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:36 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0871211 (min) 0.148548 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.070067 (min) 0.326094 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: x_wind: -5.33448 (min) -4.87619 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.00840076 (min) 1.19344 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.2405 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.13259 (min) 6.7178 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0936 (min) 31.3023 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -4.54345e-05 (min) 0.000162377 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:36 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:36 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:36 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:36 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:36 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:36 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:40:36 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 2] 14:40:36 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 0] 14:40:36 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 351. 0.] [ 0. 0. 0. 0. 0.] [ 15. 0. 0. 80. 0.] [ 2. 0. 234. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:36 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:36 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:36 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:36 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:36 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.020567375492052366 14:40:36 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:36 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:36 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:36 DEBUG opendrift.models.oceandrift:618: 62 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 39 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 39 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 33 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:36 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 91 14:40:36 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:36 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 91 elements 14:40:36 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:36 INFO opendrift.models.chemicaldrift:1861: partitioning: [115, 0, 259, 126, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:36 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:36 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:36 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:36 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:36 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:36 INFO opendrift.models.basemodel:2011: 2024-04-17 02:40:00.815900 - step 25 of 96 - 500 active elements (0 deactivated) 14:40:36 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:36 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:36 DEBUG opendrift.models.basemodel:2030: 57.555406704422055 <- latitude -> 57.71508800469209 14:40:36 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.689305502784004 14:40:36 DEBUG opendrift.models.basemodel:2040: -21.849818297626594 <- z -> 0.0 14:40:36 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:36 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:36 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:36 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:36 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 02:00:00 (before) 2024-04-17 03:00:00 (after) 14:40:36 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 02:00:00) in space (linearNDFast) 14:40:36 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:36 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 03:00:00) in space (linearNDFast) 14:40:36 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:36 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 02:00:00, weight 0.33) and after (2024-04-17 03:00:00, weight 0.67) in time 14:40:36 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:36 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284487 and -59.310705522830915 degrees. 14:40:36 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880284487 and -59.310705522830915 degrees. 14:40:36 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:36 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:36 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:36 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:36 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:36 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:36 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:36 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:36 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:36 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:36 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:36 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:36 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:36 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:36 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:36 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:36 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:36 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0627883 (min) 0.180597 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0764733 (min) 0.312022 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: x_wind: -5.25202 (min) -4.7536 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.920999 (min) 1.59443 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 21.9976 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.13642 (min) 6.70989 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 30.0159 (min) 31.2937 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -5.69819e-05 (min) 0.000145537 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:36 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:36 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:36 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:36 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:36 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:36 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:36 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10 14:40:36 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 0 0 0 0] 14:40:36 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 3 3 3 3] 14:40:36 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 360. 0.] [ 0. 0. 0. 0. 0.] [ 16. 0. 0. 102. 0.] [ 2. 0. 325. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:36 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:36 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:36 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:36 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:36 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.020574485833796643 14:40:36 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:36 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:36 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:36 DEBUG opendrift.models.oceandrift:618: 39 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:36 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:36 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 96 14:40:36 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:36 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 96 elements 14:40:36 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:36 INFO opendrift.models.chemicaldrift:1861: partitioning: [107, 0, 327, 66, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:36 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:36 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:36 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:36 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:36 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:36 INFO opendrift.models.basemodel:2011: 2024-04-17 03:10:00.815900 - step 26 of 96 - 500 active elements (0 deactivated) 14:40:36 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:36 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:36 DEBUG opendrift.models.basemodel:2030: 57.555406704422055 <- latitude -> 57.7201307735269 14:40:36 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.694760379359657 14:40:36 DEBUG opendrift.models.basemodel:2040: -21.753475050489847 <- z -> -0.10420071086788729 14:40:36 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:36 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:36 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:36 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:36 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:36 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 03:00:00 (before) 2024-04-17 04:00:00 (after) 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:39 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:39 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 47x33x7) for time after (2024-04-17 04:00:00) 14:40:39 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 03:00:00) in space (linearNDFast) 14:40:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:39 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 04:00:00) in space (linearNDFast) 14:40:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:39 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 03:00:00, weight 0.83) and after (2024-04-17 04:00:00, weight 0.17) in time 14:40:39 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.30525065354176 degrees. 14:40:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.30525065354176 degrees. 14:40:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:39 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0338112 (min) 0.210428 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0791409 (min) 0.33228 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: x_wind: -5.16336 (min) -4.63052 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.47127 (min) 1.84297 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 21.7616 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.13908 (min) 6.70296 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.9791 (min) 31.3014 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -6.55736e-05 (min) 0.000106044 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:39 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:39 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:39 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:39 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:39 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9 14:40:39 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 2 0 0 0 0] 14:40:39 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0 3 3 3 3] 14:40:39 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 367. 0.] [ 0. 0. 0. 0. 0.] [ 18. 0. 0. 129. 0.] [ 2. 0. 421. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:39 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:39 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:39 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.020833393712142014 14:40:39 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:39 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:39 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:39 DEBUG opendrift.models.oceandrift:618: 39 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 36 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 37 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 36 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:39 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 50 14:40:39 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 50 elements 14:40:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:39 INFO opendrift.models.chemicaldrift:1861: partitioning: [102, 0, 349, 49, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:39 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:39 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:39 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:39 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:39 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:39 INFO opendrift.models.basemodel:2011: 2024-04-17 03:40:00.815900 - step 27 of 96 - 500 active elements (0 deactivated) 14:40:39 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:39 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:39 DEBUG opendrift.models.basemodel:2030: 57.555406704422055 <- latitude -> 57.72550100218177 14:40:39 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.698622657864448 14:40:39 DEBUG opendrift.models.basemodel:2040: -21.360227470151653 <- z -> -0.20178460342783802 14:40:39 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:39 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 03:00:00 (before) 2024-04-17 04:00:00 (after) 14:40:39 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 03:00:00) in space (linearNDFast) 14:40:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:39 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 04:00:00) in space (linearNDFast) 14:40:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:39 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 03:00:00, weight 0.33) and after (2024-04-17 04:00:00, weight 0.67) in time 14:40:39 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.3013883650333 degrees. 14:40:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.3013883650333 degrees. 14:40:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:39 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:39 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:39 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:39 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0621943 (min) 0.163335 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0778961 (min) 0.32796 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: x_wind: -5.09782 (min) -4.51037 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.41826 (min) 1.79707 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 21.5822 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14055 (min) 6.72413 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.7395 (min) 31.2839 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -6.61473e-05 (min) 8.04752e-05 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:39 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:39 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:39 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:39 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:39 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:39 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 15 14:40:39 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 2 0 0 2 0 0 0 0 0 0 0] 14:40:39 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 0 3 3 0 3 3 3 3 3 3 3] 14:40:39 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 378. 0.] [ 0. 0. 0. 0. 0.] [ 22. 0. 0. 155. 0.] [ 2. 0. 471. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:39 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:39 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:39 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.020236718122510877 14:40:39 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:39 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:39 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:39 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 35 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 33 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:39 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:39 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 31 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:40 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:40 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:40 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 36 14:40:40 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:40 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 36 elements 14:40:40 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:40 INFO opendrift.models.chemicaldrift:1861: partitioning: [95, 0, 359, 46, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:40 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:40 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:40 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:40 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:40 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:40 INFO opendrift.models.basemodel:2011: 2024-04-17 04:10:00.815900 - step 28 of 96 - 500 active elements (0 deactivated) 14:40:40 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:40 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:40 DEBUG opendrift.models.basemodel:2030: 57.555406704422055 <- latitude -> 57.73080144800275 14:40:40 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.70074021656315 14:40:40 DEBUG opendrift.models.basemodel:2040: -19.53565372830074 <- z -> -0.09817995579941641 14:40:40 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:40 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:40 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:40 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:40 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:40 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:40 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:40 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:40 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 04:00:00 (before) 2024-04-17 05:00:00 (after) 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:43 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:43 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 48x32x7) for time after (2024-04-17 05:00:00) 14:40:43 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 04:00:00) in space (linearNDFast) 14:40:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:43 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 05:00:00) in space (linearNDFast) 14:40:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:43 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 04:00:00, weight 0.83) and after (2024-04-17 05:00:00, weight 0.17) in time 14:40:43 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.299270812901355 degrees. 14:40:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.299270812901355 degrees. 14:40:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:43 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0665736 (min) 0.185042 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0748803 (min) 0.334569 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.96271 (min) -4.33296 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.39582 (min) 1.79507 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 21.4411 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1429 (min) 6.73029 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6511 (min) 31.2888 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -7.18302e-05 (min) 7.46641e-05 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:43 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:43 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:43 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:43 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:43 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:43 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:43 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 13 14:40:43 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 0 2 0 0 0 0 0 0 0] 14:40:43 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 3 0 3 3 3 3 3 3 3] 14:40:43 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 388. 0.] [ 0. 0. 0. 0. 0.] [ 25. 0. 0. 177. 0.] [ 2. 0. 507. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:43 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:43 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:43 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.019208883624890198 14:40:43 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:43 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:43 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:43 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 32 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 26 14:40:43 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 26 elements 14:40:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:43 INFO opendrift.models.chemicaldrift:1861: partitioning: [88, 0, 364, 48, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:43 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:43 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:43 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:43 INFO opendrift.models.basemodel:2011: 2024-04-17 04:40:00.815900 - step 29 of 96 - 500 active elements (0 deactivated) 14:40:43 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:43 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:43 DEBUG opendrift.models.basemodel:2030: 57.555406704422055 <- latitude -> 57.73620867193569 14:40:43 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.704213483151255 14:40:43 DEBUG opendrift.models.basemodel:2040: -19.76793366429235 <- z -> -0.31670580396387027 14:40:43 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:43 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 04:00:00 (before) 2024-04-17 05:00:00 (after) 14:40:43 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 04:00:00) in space (linearNDFast) 14:40:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:43 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 05:00:00) in space (linearNDFast) 14:40:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:43 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 04:00:00, weight 0.33) and after (2024-04-17 05:00:00, weight 0.67) in time 14:40:43 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.29579754451106 degrees. 14:40:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.501208808145236 and -59.29579754451106 degrees. 14:40:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:43 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:43 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:43 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0469497 (min) 0.232558 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0689042 (min) 0.312886 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.6682 (min) -4.07489 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.4495 (min) 1.8916 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 22.1335 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14701 (min) 6.69843 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.7588 (min) 31.278 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -7.57943e-05 (min) 5.65547e-05 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:43 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:43 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:43 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:43 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:43 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:43 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:40:43 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2] 14:40:43 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0] 14:40:43 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 388. 0.] [ 0. 0. 0. 0. 0.] [ 28. 0. 0. 195. 0.] [ 2. 0. 533. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:43 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:43 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:43 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017283255507408907 14:40:43 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:43 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:43 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:43 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:43 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 20 14:40:43 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 20 elements 14:40:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:43 INFO opendrift.models.chemicaldrift:1861: partitioning: [91, 0, 359, 50, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:43 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:43 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:43 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:43 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:43 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:43 INFO opendrift.models.basemodel:2011: 2024-04-17 05:10:00.815900 - step 30 of 96 - 500 active elements (0 deactivated) 14:40:43 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:43 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:43 DEBUG opendrift.models.basemodel:2030: 57.55540670442206 <- latitude -> 57.741265502675475 14:40:43 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.705148692229214 14:40:43 DEBUG opendrift.models.basemodel:2040: -19.22336649397261 <- z -> -0.16578343045334326 14:40:43 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:43 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 05:00:00 (before) 2024-04-17 06:00:00 (after) 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:48 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:48 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 50x32x7) for time after (2024-04-17 06:00:00) 14:40:48 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 05:00:00) in space (linearNDFast) 14:40:48 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:48 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 06:00:00) in space (linearNDFast) 14:40:48 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:48 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 05:00:00, weight 0.83) and after (2024-04-17 06:00:00, weight 0.17) in time 14:40:48 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:48 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120879213786 and -59.294862325002576 degrees. 14:40:48 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120879213786 and -59.294862325002576 degrees. 14:40:48 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:48 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:48 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:48 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:48 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:48 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:48 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:48 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:48 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:48 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:48 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:48 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:48 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:48 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:48 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0511781 (min) 0.220461 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0606582 (min) 0.288264 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.37759 (min) -3.79293 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.49513 (min) 1.95158 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 23.4451 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1494 (min) 6.68553 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.9206 (min) 31.2752 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -9.03592e-05 (min) 5.96522e-05 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:48 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:48 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:48 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:48 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:48 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:48 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:48 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8 14:40:48 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 0 0 0] 14:40:48 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 3 3 3] 14:40:48 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 394. 0.] [ 0. 0. 0. 0. 0.] [ 30. 0. 0. 217. 0.] [ 2. 0. 553. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:48 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:48 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:48 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:48 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:48 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.015612655295295343 14:40:48 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:48 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:48 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:48 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21 14:40:48 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:48 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements 14:40:48 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:48 INFO opendrift.models.chemicaldrift:1861: partitioning: [87, 0, 358, 55, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:48 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:48 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:48 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:48 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:48 INFO opendrift.models.basemodel:2011: 2024-04-17 05:40:00.815900 - step 31 of 96 - 500 active elements (0 deactivated) 14:40:48 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:48 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:48 DEBUG opendrift.models.basemodel:2030: 57.55540670442207 <- latitude -> 57.74592439935137 14:40:48 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.708992593249809 14:40:48 DEBUG opendrift.models.basemodel:2040: -20.911709318171127 <- z -> -0.20172106371891993 14:40:48 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:48 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:48 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:48 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:48 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 05:00:00 (before) 2024-04-17 06:00:00 (after) 14:40:48 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 05:00:00) in space (linearNDFast) 14:40:48 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:48 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 06:00:00) in space (linearNDFast) 14:40:48 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:48 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 05:00:00, weight 0.33) and after (2024-04-17 06:00:00, weight 0.67) in time 14:40:48 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:48 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120879213786 and -59.29101844324683 degrees. 14:40:48 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120879213786 and -59.29101844324683 degrees. 14:40:48 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:48 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:48 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:48 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:48 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:48 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:48 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:48 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:48 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:48 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:48 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:48 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:48 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:48 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:48 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:48 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:48 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:48 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0436027 (min) 0.191058 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0478814 (min) 0.262633 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.09476 (min) -3.46254 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.52472 (min) 1.87845 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 25.324 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.14992 (min) 6.68659 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.9259 (min) 31.2726 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000131304 (min) 0.000373812 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:48 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:48 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:48 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:48 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:48 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:48 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:40:48 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 2 2] 14:40:48 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 0] 14:40:48 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 397. 0.] [ 0. 0. 0. 0. 0.] [ 33. 0. 0. 237. 0.] [ 2. 0. 574. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:48 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:48 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:48 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:48 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:48 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013870227921916957 14:40:48 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:48 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:48 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:48 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:48 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:48 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:48 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 17 14:40:48 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:48 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 17 elements 14:40:48 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:48 INFO opendrift.models.chemicaldrift:1861: partitioning: [87, 0, 350, 63, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:48 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:48 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:48 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:48 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:48 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:48 INFO opendrift.models.basemodel:2011: 2024-04-17 06:10:00.815900 - step 32 of 96 - 500 active elements (0 deactivated) 14:40:48 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:48 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:48 DEBUG opendrift.models.basemodel:2030: 57.55540670442207 <- latitude -> 57.74973740253367 14:40:48 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.71429963521853 14:40:48 DEBUG opendrift.models.basemodel:2040: -20.82162498295919 <- z -> -0.12562257786284123 14:40:48 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:48 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:48 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:48 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:48 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:48 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 06:00:00 (before) 2024-04-17 07:00:00 (after) 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:51 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:51 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 51x32x7) for time after (2024-04-17 07:00:00) 14:40:51 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 06:00:00) in space (linearNDFast) 14:40:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:51 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 07:00:00) in space (linearNDFast) 14:40:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:51 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 06:00:00, weight 0.83) and after (2024-04-17 07:00:00, weight 0.17) in time 14:40:51 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120879213786 and -59.285711395455486 degrees. 14:40:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120879213786 and -59.285711395455486 degrees. 14:40:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:51 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0507402 (min) 0.186555 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0344616 (min) 0.28899 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.91126 (min) -3.23864 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.44217 (min) 1.71527 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 27.0644 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.15167 (min) 6.69169 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.9002 (min) 31.2704 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000165568 (min) 8.91328e-05 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:51 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:51 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:51 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:51 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:51 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:51 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:51 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10 14:40:51 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 0 2 2 0 0 2] 14:40:51 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 3 0 0 3 3 0] 14:40:51 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 402. 0.] [ 0. 0. 0. 0. 0.] [ 38. 0. 0. 259. 0.] [ 2. 0. 591. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:51 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:51 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:51 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01265043096687467 14:40:51 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:51 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:51 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:51 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 4 14:40:51 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 4 elements 14:40:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:51 INFO opendrift.models.chemicaldrift:1861: partitioning: [87, 0, 334, 79, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:51 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:51 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:51 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:51 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:51 INFO opendrift.models.basemodel:2011: 2024-04-17 06:40:00.815900 - step 33 of 96 - 500 active elements (0 deactivated) 14:40:51 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:51 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:51 DEBUG opendrift.models.basemodel:2030: 57.555406704422076 <- latitude -> 57.75440796080328 14:40:51 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.719101696560163 14:40:51 DEBUG opendrift.models.basemodel:2040: -21.688523114700423 <- z -> -0.23637690541214426 14:40:51 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:51 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 06:00:00 (before) 2024-04-17 07:00:00 (after) 14:40:51 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 06:00:00) in space (linearNDFast) 14:40:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:51 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 07:00:00) in space (linearNDFast) 14:40:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:51 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 06:00:00, weight 0.33) and after (2024-04-17 07:00:00, weight 0.67) in time 14:40:51 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880461163 and -59.28090933785778 degrees. 14:40:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880461163 and -59.28090933785778 degrees. 14:40:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:51 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:51 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:51 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0569036 (min) 0.156435 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.015095 (min) 0.26163 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.94854 (min) -3.21648 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.13578 (min) 1.42096 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 30.3814 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.15667 (min) 6.70488 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.8617 (min) 31.2706 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000168231 (min) 0.000339306 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:51 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:51 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:51 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:51 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:51 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:51 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9 14:40:51 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0 0 0 2 0] 14:40:51 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3 3 3 0 3] 14:40:51 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 408. 0.] [ 0. 0. 0. 0. 0.] [ 41. 0. 0. 274. 0.] [ 2. 0. 595. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:51 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:51 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:51 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012350222029494819 14:40:51 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:51 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:51 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:51 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:51 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:51 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:51 INFO opendrift.models.chemicaldrift:1861: partitioning: [84, 0, 305, 111, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:51 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:51 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:51 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:51 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:51 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:51 INFO opendrift.models.basemodel:2011: 2024-04-17 07:10:00.815900 - step 34 of 96 - 500 active elements (0 deactivated) 14:40:51 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:51 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:51 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.75863636441278 14:40:51 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.722791963677595 14:40:51 DEBUG opendrift.models.basemodel:2040: -21.34336349250806 <- z -> -0.12019620652408636 14:40:51 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:51 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 07:00:00 (before) 2024-04-17 08:00:00 (after) 14:40:53 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:53 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:53 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:53 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:53 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:53 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:53 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 52x32x7) for time after (2024-04-17 08:00:00) 14:40:53 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 07:00:00) in space (linearNDFast) 14:40:53 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:53 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 08:00:00) in space (linearNDFast) 14:40:53 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:53 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 07:00:00, weight 0.83) and after (2024-04-17 08:00:00, weight 0.17) in time 14:40:53 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:53 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880461163 and -59.277219063464834 degrees. 14:40:53 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880461163 and -59.277219063464834 degrees. 14:40:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:53 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:53 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:53 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:53 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:53 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:53 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:53 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:53 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:53 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:53 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0612652 (min) 0.15123 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.00313643 (min) 0.213194 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.03113 (min) -3.21258 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.881418 (min) 1.18617 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 33.6197 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.16163 (min) 6.74568 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6129 (min) 31.4851 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000194483 (min) 0.000579691 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:53 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:53 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:53 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:40:54 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:54 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:54 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:54 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:54 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7 14:40:54 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 3 2 2] 14:40:54 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0 0 0] 14:40:54 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 409. 0.] [ 0. 0. 0. 0. 0.] [ 46. 0. 0. 300. 0.] [ 3. 0. 595. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:54 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:54 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:54 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:54 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:54 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012385045581322094 14:40:54 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:54 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:54 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:54 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:40:54 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:54 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:40:54 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:54 INFO opendrift.models.chemicaldrift:1861: partitioning: [89, 0, 280, 131, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:54 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:54 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:54 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 6 elements to seafloor. 14:40:54 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:54 INFO opendrift.models.basemodel:2011: 2024-04-17 07:40:00.815900 - step 35 of 96 - 500 active elements (0 deactivated) 14:40:54 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:54 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:54 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.761096776475945 14:40:54 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.725993551584487 14:40:54 DEBUG opendrift.models.basemodel:2040: -22.394588916678522 <- z -> -0.2796407432328495 14:40:54 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:54 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:54 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:54 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:54 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 07:00:00 (before) 2024-04-17 08:00:00 (after) 14:40:54 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 07:00:00) in space (linearNDFast) 14:40:54 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:54 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 08:00:00) in space (linearNDFast) 14:40:54 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:54 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 07:00:00, weight 0.33) and after (2024-04-17 08:00:00, weight 0.67) in time 14:40:54 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:54 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.27401747772596 degrees. 14:40:54 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.27401747772596 degrees. 14:40:54 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:54 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:54 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:54 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:54 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:54 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:54 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:54 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:54 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:54 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:54 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:54 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:54 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:54 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:54 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:54 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:54 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:54 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:54 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:54 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:54 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:54 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0620307 (min) 0.128847 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0295489 (min) 0.196797 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.24499 (min) -3.23546 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.730888 (min) 1.21273 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 35.682 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1665 (min) 6.77162 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6109 (min) 31.8676 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000153948 (min) 0.000722175 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:54 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:54 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:54 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:54 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:54 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:54 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8 14:40:54 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 0 0 0 3] 14:40:54 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 3 3 3 0] 14:40:54 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 413. 0.] [ 0. 0. 0. 0. 0.] [ 49. 0. 0. 321. 0.] [ 4. 0. 596. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:54 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:54 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:54 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:54 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:54 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013411519087511582 14:40:54 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:54 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:54 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:54 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:54 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:54 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:54 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:54 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:54 INFO opendrift.models.chemicaldrift:1861: partitioning: [89, 0, 262, 149, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:54 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:54 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:54 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:54 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:40:54 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:54 INFO opendrift.models.basemodel:2011: 2024-04-17 08:10:00.815900 - step 36 of 96 - 500 active elements (0 deactivated) 14:40:54 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:54 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:54 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.76385479482197 14:40:54 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.729218249961402 14:40:54 DEBUG opendrift.models.basemodel:2040: -21.421297206172422 <- z -> -0.17811759453033899 14:40:54 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:54 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:54 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:54 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:54 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:54 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 08:00:00 (before) 2024-04-17 09:00:00 (after) 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:56 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:56 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 53x32x7) for time after (2024-04-17 09:00:00) 14:40:56 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 08:00:00) in space (linearNDFast) 14:40:56 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:56 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 09:00:00) in space (linearNDFast) 14:40:56 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:56 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 08:00:00, weight 0.83) and after (2024-04-17 09:00:00, weight 0.17) in time 14:40:56 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:56 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.27079277673623 degrees. 14:40:56 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.27079277673623 degrees. 14:40:56 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:56 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:56 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:56 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:56 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:56 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:56 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:56 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:56 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:56 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:56 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:56 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:56 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:56 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:56 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0665988 (min) 0.104066 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0485746 (min) 0.184616 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.26716 (min) -3.14219 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.810124 (min) 1.42579 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 38.0325 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.17066 (min) 7.06223 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.3572 (min) 32.7445 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000151289 (min) 0.000743885 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:56 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:40:56 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:56 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:56 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:56 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:56 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 9 14:40:56 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0 0 0 0 0 0] 14:40:56 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3 3 3 3 3 3] 14:40:56 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 422. 0.] [ 0. 0. 0. 0. 0.] [ 49. 0. 0. 336. 0.] [ 4. 0. 596. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:56 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:56 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:56 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013636111799933934 14:40:56 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:56 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:56 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:56 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:56 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:56 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:56 INFO opendrift.models.chemicaldrift:1861: partitioning: [80, 0, 246, 174, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:56 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:56 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:56 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:56 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:56 INFO opendrift.models.basemodel:2011: 2024-04-17 08:40:00.815900 - step 37 of 96 - 500 active elements (0 deactivated) 14:40:56 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:56 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:56 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.763725092402794 14:40:56 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.731662174644855 14:40:56 DEBUG opendrift.models.basemodel:2040: -22.29052640146102 <- z -> -0.10190157076065243 14:40:56 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:56 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:56 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:56 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:56 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 08:00:00 (before) 2024-04-17 09:00:00 (after) 14:40:56 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 08:00:00) in space (linearNDFast) 14:40:56 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:56 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 09:00:00) in space (linearNDFast) 14:40:56 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:56 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 08:00:00, weight 0.33) and after (2024-04-17 09:00:00, weight 0.67) in time 14:40:56 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:56 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26834884978267 degrees. 14:40:56 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26834884978267 degrees. 14:40:56 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:56 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:56 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:56 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:56 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:56 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:56 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:56 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:56 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:56 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:56 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:56 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:56 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:56 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:56 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:56 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:56 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:56 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0864734 (min) 0.0738856 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0660895 (min) 0.160816 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.87881 (min) -2.85042 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.34796 (min) 1.84263 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 37.7593 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.17562 (min) 6.90459 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.3787 (min) 32.4166 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000136923 (min) 0.000630612 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:56 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:56 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:56 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:56 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:56 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:56 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:56 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:40:56 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0] 14:40:56 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3] 14:40:56 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 426. 0.] [ 0. 0. 0. 0. 0.] [ 50. 0. 0. 352. 0.] [ 4. 0. 596. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:56 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:56 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:56 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012239540416359756 14:40:56 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:56 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:56 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:56 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:56 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:56 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:56 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:56 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:56 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:56 INFO opendrift.models.chemicaldrift:1861: partitioning: [77, 0, 232, 191, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:56 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:56 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:56 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:56 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:56 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:56 INFO opendrift.models.basemodel:2011: 2024-04-17 09:10:00.815900 - step 38 of 96 - 500 active elements (0 deactivated) 14:40:56 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:56 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:56 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.76485627375523 14:40:56 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.73388138000483 14:40:56 DEBUG opendrift.models.basemodel:2040: -22.5846875016322 <- z -> -0.06420276831997027 14:40:56 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:56 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:56 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:56 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:56 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:56 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 09:00:00 (before) 2024-04-17 10:00:00 (after) 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:40:58 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:40:58 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 53x32x7) for time after (2024-04-17 10:00:00) 14:40:58 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 09:00:00) in space (linearNDFast) 14:40:58 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:58 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 10:00:00) in space (linearNDFast) 14:40:58 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:58 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 09:00:00, weight 0.83) and after (2024-04-17 10:00:00, weight 0.17) in time 14:40:58 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:58 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.266129637983354 degrees. 14:40:58 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.266129637983354 degrees. 14:40:58 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:58 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:58 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:58 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:58 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:58 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:58 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:58 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:58 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:58 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:58 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:58 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:58 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:58 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:58 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.102415 (min) 0.0429942 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0976487 (min) 0.147797 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.52408 (min) -2.49525 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.77485 (min) 2.26954 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 38.8207 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.18172 (min) 6.97563 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.2313 (min) 32.5348 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000112911 (min) 0.000511289 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:58 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:58 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:58 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:58 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:58 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:58 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 10 14:40:58 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 0 2 3 0 0] 14:40:58 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 3 0 0 3 3] 14:40:58 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 433. 0.] [ 0. 0. 0. 0. 0.] [ 52. 0. 0. 365. 0.] [ 5. 0. 596. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:58 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:58 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:58 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011439882928309332 14:40:58 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:58 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:58 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:58 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:40:58 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:58 INFO opendrift.models.chemicaldrift:1861: partitioning: [73, 0, 217, 210, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:58 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:58 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:58 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:58 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:58 INFO opendrift.models.basemodel:2011: 2024-04-17 09:40:00.815900 - step 39 of 96 - 500 active elements (0 deactivated) 14:40:58 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:58 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:58 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.76670357204779 14:40:58 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.735179651123929 14:40:58 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.23419565023680577 14:40:58 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:58 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:58 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:58 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:58 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 09:00:00 (before) 2024-04-17 10:00:00 (after) 14:40:58 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 09:00:00) in space (linearNDFast) 14:40:58 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:58 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 10:00:00) in space (linearNDFast) 14:40:58 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:40:58 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 09:00:00, weight 0.33) and after (2024-04-17 10:00:00, weight 0.67) in time 14:40:58 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:40:58 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.264831369499056 degrees. 14:40:58 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.264831369499056 degrees. 14:40:58 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:58 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:40:58 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:40:58 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:58 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:40:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:58 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:58 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:58 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:40:58 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:40:58 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:58 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:40:58 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:40:58 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:40:58 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:40:58 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:40:58 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:40:58 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:40:58 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.110507 (min) 0.0407696 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.123868 (min) 0.133278 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.21309 (min) -2.03512 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.98033 (min) 2.70019 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 40.5242 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.1876 (min) 7.03449 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.8328 (min) 32.6733 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -9.72722e-05 (min) 0.000390355 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:40:58 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:40:58 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:40:58 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:40:58 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:40:58 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:40:58 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:40:58 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 2 0] 14:40:58 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 0 3] 14:40:58 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 437. 0.] [ 0. 0. 0. 0. 0.] [ 54. 0. 0. 378. 0.] [ 5. 0. 596. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:40:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:40:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:58 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:40:58 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:40:58 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010613968543964153 14:40:58 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:40:58 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:40:58 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:40:58 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:40:58 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:40:58 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:40:58 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:40:58 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:40:58 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:40:58 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:40:58 INFO opendrift.models.chemicaldrift:1861: partitioning: [71, 0, 207, 222, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:40:58 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:40:58 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:40:58 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:40:58 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:40:58 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:40:58 INFO opendrift.models.basemodel:2011: 2024-04-17 10:10:00.815900 - step 40 of 96 - 500 active elements (0 deactivated) 14:40:58 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:40:58 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:40:58 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.76801391103329 14:40:58 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.735470510221349 14:40:58 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.3035219460476488 14:40:58 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:40:58 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:40:58 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:40:58 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:40:58 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:40:58 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 10:00:00 (before) 2024-04-17 11:00:00 (after) 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:00 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:00 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 53x32x7) for time after (2024-04-17 11:00:00) 14:41:00 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 10:00:00) in space (linearNDFast) 14:41:00 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:00 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 11:00:00) in space (linearNDFast) 14:41:00 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:00 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 10:00:00, weight 0.83) and after (2024-04-17 11:00:00, weight 0.17) in time 14:41:00 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:00 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26454052290598 degrees. 14:41:00 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26454052290598 degrees. 14:41:00 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:00 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:00 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:00 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:00 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:00 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:00 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:00 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:00 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:00 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:00 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:00 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:00 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.12099 (min) 0.0328157 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.130052 (min) 0.154365 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.7731 (min) -1.51121 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: y_wind: 2.13158 (min) 2.99337 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 41.7846 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.19319 (min) 7.011 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.37 (min) 31.6857 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -4.80226e-05 (min) 0.000310148 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:00 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:00 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:00 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:00 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:00 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:00 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:00 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7 14:41:00 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 2 0 0 0] 14:41:00 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 0 3 3 3] 14:41:00 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 442. 0.] [ 0. 0. 0. 0. 0.] [ 56. 0. 0. 387. 0.] [ 5. 0. 597. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:00 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:00 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:00 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00942591481643341 14:41:00 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:00 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:00 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2 14:41:00 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements 14:41:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:00 INFO opendrift.models.chemicaldrift:1861: partitioning: [68, 0, 198, 234, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:00 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:00 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:00 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:00 INFO opendrift.models.basemodel:2011: 2024-04-17 10:40:00.815900 - step 41 of 96 - 500 active elements (0 deactivated) 14:41:00 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:00 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:00 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.77038820915109 14:41:00 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.734816928813187 14:41:00 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.0199061918016523 14:41:00 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:00 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:00 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:00 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 10:00:00 (before) 2024-04-17 11:00:00 (after) 14:41:00 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 10:00:00) in space (linearNDFast) 14:41:00 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:00 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 11:00:00) in space (linearNDFast) 14:41:00 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:00 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 10:00:00, weight 0.33) and after (2024-04-17 11:00:00, weight 0.67) in time 14:41:00 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:00 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26519410257077 degrees. 14:41:00 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26519410257077 degrees. 14:41:00 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:00 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:00 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:00 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:00 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:00 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:00 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:00 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:00 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:00 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:00 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:00 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:00 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:00 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:00 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.117526 (min) 0.0445839 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.131553 (min) 0.198207 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.11619 (min) -0.847887 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: y_wind: 2.1746 (min) 3.04241 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 43.9857 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.19819 (min) 7.0513 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.4021 (min) 32.1973 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -2.76686e-05 (min) 0.000368542 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:00 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:00 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:00 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:00 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:00 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:00 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:00 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:00 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0] 14:41:00 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3] 14:41:00 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 444. 0.] [ 0. 0. 0. 0. 0.] [ 57. 0. 0. 396. 0.] [ 5. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:00 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:00 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:00 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.007488254899218005 14:41:00 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:00 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:00 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:00 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:00 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:00 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:00 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:00 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:00 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:00 INFO opendrift.models.chemicaldrift:1861: partitioning: [67, 0, 189, 244, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:00 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:00 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:00 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:00 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:00 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:00 INFO opendrift.models.basemodel:2011: 2024-04-17 11:10:00.815900 - step 42 of 96 - 500 active elements (0 deactivated) 14:41:00 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:00 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:00 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.77182622228022 14:41:00 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.733813719754696 14:41:00 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.30274111672697346 14:41:00 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:00 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:00 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:00 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:00 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 11:00:00 (before) 2024-04-17 12:00:00 (after) 14:41:02 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:02 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:02 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:02 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:02 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:02 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:02 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 54x33x7) for time after (2024-04-17 12:00:00) 14:41:02 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 11:00:00) in space (linearNDFast) 14:41:02 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:02 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 12:00:00) in space (linearNDFast) 14:41:02 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:02 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 11:00:00, weight 0.83) and after (2024-04-17 12:00:00, weight 0.17) in time 14:41:02 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:02 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26619729310233 degrees. 14:41:02 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26619729310233 degrees. 14:41:02 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:02 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:02 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:02 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:02 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:02 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:02 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:02 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:02 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:02 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:02 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:02 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:02 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:02 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:02 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:02 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:02 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:02 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:02 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:02 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:02 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:03 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:03 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.110956 (min) 0.0640133 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.127301 (min) 0.235908 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.6544 (min) -0.223726 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: y_wind: 2.07779 (min) 2.94468 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 45.3938 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.20463 (min) 7.10858 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.4009 (min) 31.7593 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -1.12687e-05 (min) 0.000390917 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:03 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:03 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:03 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:03 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 0 0] 14:41:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3] 14:41:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 449. 0.] [ 0. 0. 0. 0. 0.] [ 58. 0. 0. 404. 0.] [ 5. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:03 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:03 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0063060383421348525 14:41:03 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:03 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:03 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [63, 0, 177, 260, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:03 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:03 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:03 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:03 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:03 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:03 INFO opendrift.models.basemodel:2011: 2024-04-17 11:40:00.815900 - step 43 of 96 - 500 active elements (0 deactivated) 14:41:03 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:03 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:03 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.77533747989551 14:41:03 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.733688879728273 14:41:03 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.06506261910565975 14:41:03 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:03 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 11:00:00 (before) 2024-04-17 12:00:00 (after) 14:41:03 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 11:00:00) in space (linearNDFast) 14:41:03 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:03 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 12:00:00) in space (linearNDFast) 14:41:03 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:03 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 11:00:00, weight 0.33) and after (2024-04-17 12:00:00, weight 0.67) in time 14:41:03 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:03 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.266322139296314 degrees. 14:41:03 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.266322139296314 degrees. 14:41:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:03 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:03 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:03 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:03 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:03 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:03 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.114717 (min) 0.0748286 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.112131 (min) 0.261338 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.49683 (min) 0.333517 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.70189 (min) 2.55596 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 48.7534 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.21101 (min) 7.17583 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.3957 (min) 31.9037 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -4.07803e-06 (min) 0.000341403 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:03 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:03 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:03 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 2 2] 14:41:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 0 0] 14:41:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 449. 0.] [ 0. 0. 0. 0. 0.] [ 64. 0. 0. 415. 0.] [ 5. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:03 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:03 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004865086457824877 14:41:03 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:03 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:03 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:03 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [69, 0, 165, 266, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:03 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:03 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:03 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:03 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:03 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:03 INFO opendrift.models.basemodel:2011: 2024-04-17 12:10:00.815900 - step 44 of 96 - 500 active elements (0 deactivated) 14:41:03 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:03 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:03 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.77880023390941 14:41:03 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.733870017939655 14:41:03 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.3612296244993544 14:41:03 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:03 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 12:00:00 (before) 2024-04-17 13:00:00 (after) 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:05 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:05 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 55x33x7) for time after (2024-04-17 13:00:00) 14:41:05 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 12:00:00) in space (linearNDFast) 14:41:05 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:05 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 13:00:00) in space (linearNDFast) 14:41:05 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:05 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 12:00:00, weight 0.83) and after (2024-04-17 13:00:00, weight 0.17) in time 14:41:05 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:05 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26614099618027 degrees. 14:41:05 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26614099618027 degrees. 14:41:05 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:05 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:05 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:05 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:05 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:05 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:05 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:05 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:05 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:05 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:05 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:05 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:05 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:05 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:05 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.125596 (min) 0.0841234 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0939654 (min) 0.301885 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.39471 (min) 0.810799 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.4817 (min) 2.33999 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 52.1446 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.21555 (min) 7.1806 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5885 (min) 32.8147 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -5.27637e-05 (min) 0.000371865 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:05 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:05 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:05 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:05 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:05 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:05 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 2 0] 14:41:05 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 0 3] 14:41:05 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 452. 0.] [ 0. 0. 0. 0. 0.] [ 67. 0. 0. 421. 0.] [ 5. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:05 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:05 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:05 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004099246341166218 14:41:05 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:05 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:05 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:05 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:05 INFO opendrift.models.chemicaldrift:1861: partitioning: [69, 0, 152, 279, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:05 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:05 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:05 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:05 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:05 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:05 INFO opendrift.models.basemodel:2011: 2024-04-17 12:40:00.815900 - step 45 of 96 - 500 active elements (0 deactivated) 14:41:05 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:05 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:05 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.7806342509217 14:41:05 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.734542543602357 14:41:05 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.3674385262974989 14:41:05 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:05 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:05 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:05 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:05 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 12:00:00 (before) 2024-04-17 13:00:00 (after) 14:41:05 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 12:00:00) in space (linearNDFast) 14:41:05 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:05 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 13:00:00) in space (linearNDFast) 14:41:05 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:05 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 12:00:00, weight 0.33) and after (2024-04-17 13:00:00, weight 0.67) in time 14:41:05 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:05 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26546846830839 degrees. 14:41:05 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.26546846830839 degrees. 14:41:05 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:05 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:05 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:05 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:05 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:05 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:05 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:05 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:05 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:05 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:05 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:05 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:05 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:05 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:05 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:05 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:05 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:05 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.126413 (min) 0.120971 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0666505 (min) 0.368402 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.3985 (min) 1.01416 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.57226 (min) 2.22629 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 53.958 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.22055 (min) 7.23289 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5377 (min) 33.0966 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -8.31998e-05 (min) 0.000362716 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:05 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:05 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:05 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:05 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:05 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:05 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:05 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:05 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:05 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0] 14:41:05 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3] 14:41:05 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 454. 0.] [ 0. 0. 0. 0. 0.] [ 68. 0. 0. 431. 0.] [ 5. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:05 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:05 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:05 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003954863861742449 14:41:05 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:05 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:05 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:05 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:05 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:05 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:05 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:05 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:05 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:05 INFO opendrift.models.chemicaldrift:1861: partitioning: [68, 0, 143, 289, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:05 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:05 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:05 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:05 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:05 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:05 INFO opendrift.models.basemodel:2011: 2024-04-17 13:10:00.815900 - step 46 of 96 - 500 active elements (0 deactivated) 14:41:05 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:05 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:05 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.78235969917221 14:41:05 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.73652287240574 14:41:05 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.2792206237807329 14:41:05 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:05 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:05 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:05 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:05 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:05 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 13:00:00 (before) 2024-04-17 14:00:00 (after) 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:08 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:08 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 55x33x7) for time after (2024-04-17 14:00:00) 14:41:08 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 13:00:00) in space (linearNDFast) 14:41:08 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:08 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 14:00:00) in space (linearNDFast) 14:41:08 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:08 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 13:00:00, weight 0.83) and after (2024-04-17 14:00:00, weight 0.17) in time 14:41:08 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:08 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.263488140398785 degrees. 14:41:08 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.263488140398785 degrees. 14:41:08 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:08 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:08 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:08 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:08 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:08 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:08 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:08 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:08 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:08 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:08 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:08 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:08 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:08 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:08 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.122449 (min) 0.160332 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0377203 (min) 0.401825 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.28246 (min) 1.28974 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.43086 (min) 2.1622 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 55.6686 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.2269 (min) 7.29055 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.7969 (min) 32.9882 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -7.79444e-05 (min) 0.000339798 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:08 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:08 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:08 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:08 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:08 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:08 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:08 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:08 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2 2] 14:41:08 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 0] 14:41:08 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 454. 0.] [ 0. 0. 0. 0. 0.] [ 72. 0. 0. 439. 0.] [ 5. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:08 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:08 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:08 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:08 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:08 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0038490458953528974 14:41:08 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:08 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:08 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:08 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:08 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:08 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:08 INFO opendrift.models.chemicaldrift:1861: partitioning: [72, 0, 131, 297, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:08 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:08 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:08 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:08 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:08 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:08 INFO opendrift.models.basemodel:2011: 2024-04-17 13:40:00.815900 - step 47 of 96 - 500 active elements (0 deactivated) 14:41:08 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:08 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:08 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.784512067714516 14:41:08 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.739443051904718 14:41:08 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.34607519358581873 14:41:08 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:08 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:08 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:08 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:08 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 13:00:00 (before) 2024-04-17 14:00:00 (after) 14:41:08 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 13:00:00) in space (linearNDFast) 14:41:08 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:08 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 14:00:00) in space (linearNDFast) 14:41:08 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:08 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 13:00:00, weight 0.33) and after (2024-04-17 14:00:00, weight 0.67) in time 14:41:08 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:08 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.260567956381834 degrees. 14:41:08 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.260567956381834 degrees. 14:41:08 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:08 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:08 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:08 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:08 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:08 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:08 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:08 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:08 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:08 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:08 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:08 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:08 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:08 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:08 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:08 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:08 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:08 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.113548 (min) 0.253594 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.00291847 (min) 0.418662 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.927278 (min) 1.49371 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: y_wind: 1.19231 (min) 2.21085 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 57.8169 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.23596 (min) 7.32528 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.7312 (min) 32.8157 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -6.74194e-05 (min) 0.000292353 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:08 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:08 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:08 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:08 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:08 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:08 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:08 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:08 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:08 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 2 0 0 0] 14:41:08 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 3] 14:41:08 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 457. 0.] [ 0. 0. 0. 0. 0.] [ 73. 0. 0. 447. 0.] [ 6. 0. 599. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:08 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:08 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:08 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:08 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:08 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003921685944495885 14:41:08 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:08 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:08 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:08 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:08 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:08 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:08 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:08 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:08 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:08 INFO opendrift.models.chemicaldrift:1861: partitioning: [71, 0, 124, 305, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:08 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:08 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:08 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:08 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:08 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:08 INFO opendrift.models.basemodel:2011: 2024-04-17 14:10:00.815900 - step 48 of 96 - 500 active elements (0 deactivated) 14:41:08 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:08 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:08 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.78737183349564 14:41:08 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.743293419504866 14:41:08 DEBUG opendrift.models.basemodel:2040: -22.395471572875977 <- z -> -0.4519370427051892 14:41:08 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:08 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:08 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:08 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:08 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:08 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 14:00:00 (before) 2024-04-17 15:00:00 (after) 14:41:10 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:10 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:10 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:10 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:10 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:10 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:10 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 56x33x7) for time after (2024-04-17 15:00:00) 14:41:10 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 14:00:00) in space (linearNDFast) 14:41:10 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:11 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 15:00:00) in space (linearNDFast) 14:41:11 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:11 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 14:00:00, weight 0.83) and after (2024-04-17 15:00:00, weight 0.17) in time 14:41:11 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:11 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.25671759456977 degrees. 14:41:11 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.25671759456977 degrees. 14:41:11 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:11 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:11 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:11 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:11 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:11 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:11 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:11 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:11 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:11 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:11 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:11 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:11 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:11 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:11 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:11 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.104085 (min) 0.320426 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0330142 (min) 0.435089 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.628224 (min) 1.6127 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.97499 (min) 2.32321 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 60.6809 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.24099 (min) 7.37082 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5543 (min) 33.3508 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000239637 (min) 0.000276969 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:11 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:11 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:11 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:11 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:11 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:11 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:11 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:11 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 0] 14:41:11 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 3] 14:41:11 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 460. 0.] [ 0. 0. 0. 0. 0.] [ 75. 0. 0. 454. 0.] [ 6. 0. 600. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:11 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:11 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:11 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.004468291700858498 14:41:11 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:11 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:11 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 8 14:41:11 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 8 elements 14:41:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:11 INFO opendrift.models.chemicaldrift:1861: partitioning: [70, 0, 122, 308, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:11 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:11 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:11 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:11 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:11 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:11 INFO opendrift.models.basemodel:2011: 2024-04-17 14:40:00.815900 - step 49 of 96 - 500 active elements (0 deactivated) 14:41:11 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:11 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:11 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.790280966407686 14:41:11 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.748021547454153 14:41:11 DEBUG opendrift.models.basemodel:2040: -25.016888898887743 <- z -> -0.2340532396193481 14:41:11 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:11 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:11 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:11 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:11 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 14:00:00 (before) 2024-04-17 15:00:00 (after) 14:41:11 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 14:00:00) in space (linearNDFast) 14:41:11 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:11 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 15:00:00) in space (linearNDFast) 14:41:11 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:11 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 14:00:00, weight 0.33) and after (2024-04-17 15:00:00, weight 0.67) in time 14:41:11 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:11 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.25198944786754 degrees. 14:41:11 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.25198944786754 degrees. 14:41:11 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:11 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:11 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:11 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:11 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:11 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:11 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:11 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:11 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:11 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:11 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:11 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:11 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:11 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:11 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:11 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:11 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:11 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0959028 (min) 0.329388 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0529944 (min) 0.441728 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.441201 (min) 1.60692 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.81083 (min) 2.61506 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 63.5666 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.24599 (min) 7.45764 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5239 (min) 33.5891 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00047694 (min) 0.000240404 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:11 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:11 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:11 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:11 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:11 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:11 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:11 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 0] 14:41:11 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3] 14:41:11 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 463. 0.] [ 0. 0. 0. 0. 0.] [ 76. 0. 0. 462. 0.] [ 6. 0. 608. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:11 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:11 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:11 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.005572560165694134 14:41:11 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:11 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:11 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:11 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:11 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:11 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:11 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:11 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 7 14:41:11 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:11 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 7 elements 14:41:11 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:11 INFO opendrift.models.chemicaldrift:1861: partitioning: [68, 0, 119, 313, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:11 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:11 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:11 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:11 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:11 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:11 INFO opendrift.models.basemodel:2011: 2024-04-17 15:10:00.815900 - step 50 of 96 - 500 active elements (0 deactivated) 14:41:11 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:11 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:11 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.79318631249526 14:41:11 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.753570236542817 14:41:11 DEBUG opendrift.models.basemodel:2040: -25.744096602848703 <- z -> -0.2400916800349811 14:41:11 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:11 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:11 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:11 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:11 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:11 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 15:00:00 (before) 2024-04-17 16:00:00 (after) 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:13 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:13 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 56x33x7) for time after (2024-04-17 16:00:00) 14:41:13 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 15:00:00) in space (linearNDFast) 14:41:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 /root/project/opendrift/readers/interpolation/interpolators.py:17: RuntimeWarning: overflow encountered in cast data[mask] = np.finfo(np.float64).min 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 16:00:00) in space (linearNDFast) 14:41:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:13 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 15:00:00, weight 0.83) and after (2024-04-17 16:00:00, weight 0.17) in time 14:41:13 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.246440769293976 degrees. 14:41:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.246440769293976 degrees. 14:41:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:13 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0722817 (min) 0.340714 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0651427 (min) 0.4406 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.334318 (min) 1.59874 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.665773 (min) 2.69548 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 66.4471 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.25099 (min) 7.47701 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.529 (min) 33.5569 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000508157 (min) 0.000216725 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:13 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:13 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:13 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:13 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:13 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:13 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1 14:41:13 DEBUG opendrift.models.chemicaldrift:1452: old species: [0] 14:41:13 DEBUG opendrift.models.chemicaldrift:1453: new species: [3] 14:41:13 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 464. 0.] [ 0. 0. 0. 0. 0.] [ 76. 0. 0. 471. 0.] [ 6. 0. 615. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:13 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:13 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:13 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00597111176665778 14:41:13 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:13 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:13 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:13 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21 14:41:13 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements 14:41:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:13 INFO opendrift.models.chemicaldrift:1861: partitioning: [67, 0, 130, 303, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:13 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:13 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:13 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:13 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:13 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:13 INFO opendrift.models.basemodel:2011: 2024-04-17 15:40:00.815900 - step 51 of 96 - 500 active elements (0 deactivated) 14:41:13 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:13 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:13 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.79766766102447 14:41:13 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.759545798116083 14:41:13 DEBUG opendrift.models.basemodel:2040: -30.267579592026866 <- z -> -0.41528882326534894 14:41:13 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:13 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 15:00:00 (before) 2024-04-17 16:00:00 (after) 14:41:13 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 15:00:00) in space (linearNDFast) 14:41:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:13 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 16:00:00) in space (linearNDFast) 14:41:13 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:13 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 15:00:00, weight 0.33) and after (2024-04-17 16:00:00, weight 0.67) in time 14:41:13 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.240465207611166 degrees. 14:41:13 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.240465207611166 degrees. 14:41:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:13 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:13 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:13 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:13 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:13 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:13 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0501676 (min) 0.30444 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0734684 (min) 0.437947 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.387387 (min) 1.47284 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: y_wind: 0.522397 (min) 2.59099 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 70.7035 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.25599 (min) 7.48361 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5412 (min) 33.5163 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000525228 (min) 0.00035458 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:13 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:13 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:13 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:13 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:13 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:13 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:13 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0] 14:41:13 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3] 14:41:13 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 467. 0.] [ 0. 0. 0. 0. 0.] [ 76. 0. 0. 481. 0.] [ 6. 0. 636. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:13 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:13 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:13 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.005473024207418399 14:41:13 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:13 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:13 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:13 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:13 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 104 14:41:13 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:13 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 104 elements 14:41:13 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:13 INFO opendrift.models.chemicaldrift:1861: partitioning: [64, 0, 219, 217, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:13 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:13 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:13 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:13 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:13 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:13 INFO opendrift.models.basemodel:2011: 2024-04-17 16:10:00.815900 - step 52 of 96 - 500 active elements (0 deactivated) 14:41:13 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:13 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:13 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.80371922952442 14:41:13 DEBUG opendrift.models.basemodel:2035: 10.498802283234 <- longitude -> 10.766270396376136 14:41:13 DEBUG opendrift.models.basemodel:2040: -32.919132232666016 <- z -> -0.3270246220037888 14:41:13 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:13 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:13 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:13 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:13 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:13 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 16:00:00 (before) 2024-04-17 17:00:00 (after) 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:16 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:16 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 58x33x7) for time after (2024-04-17 17:00:00) 14:41:16 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 16:00:00) in space (linearNDFast) 14:41:16 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:16 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 17:00:00) in space (linearNDFast) 14:41:16 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:16 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 16:00:00, weight 0.83) and after (2024-04-17 17:00:00, weight 0.17) in time 14:41:16 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:16 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.23374059460794 degrees. 14:41:16 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.23374059460794 degrees. 14:41:16 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:16 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:16 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:16 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:16 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:16 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:16 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:16 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:16 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:16 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:16 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:16 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:16 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:16 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:16 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0317514 (min) 0.30601 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0794723 (min) 0.429877 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.364108 (min) 1.42432 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: y_wind: -0.0402413 (min) 2.43607 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 76.2485 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.26099 (min) 7.45085 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5555 (min) 33.4765 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000518018 (min) 0.000457762 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:16 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:16 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:16 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:16 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:16 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:16 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2] 14:41:16 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0] 14:41:16 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 468. 0.] [ 0. 0. 0. 0. 0.] [ 78. 0. 0. 496. 0.] [ 6. 0. 740. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:16 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:16 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:16 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.00467021137282679 14:41:16 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:16 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:16 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:16 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 106 14:41:16 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 106 elements 14:41:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:16 INFO opendrift.models.chemicaldrift:1861: partitioning: [65, 0, 281, 154, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:16 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:16 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:16 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:16 INFO opendrift.models.basemodel:2011: 2024-04-17 16:40:00.815900 - step 53 of 96 - 500 active elements (0 deactivated) 14:41:16 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:16 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:16 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.81016127962033 14:41:16 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.773753096781624 14:41:16 DEBUG opendrift.models.basemodel:2040: -34.60541473344007 <- z -> -0.5160943319262676 14:41:16 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:16 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:16 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:16 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:16 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 16:00:00 (before) 2024-04-17 17:00:00 (after) 14:41:16 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 16:00:00) in space (linearNDFast) 14:41:16 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:16 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 17:00:00) in space (linearNDFast) 14:41:16 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:16 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 16:00:00, weight 0.33) and after (2024-04-17 17:00:00, weight 0.67) in time 14:41:16 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:16 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.22625789641582 degrees. 14:41:16 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.22625789641582 degrees. 14:41:16 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:16 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:16 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:16 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:16 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:16 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:16 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:16 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:16 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:16 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:16 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:16 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:16 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:16 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:16 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:16 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:16 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0223929 (min) 0.302668 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0808419 (min) 0.410745 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.18844 (min) 1.33649 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: y_wind: -0.93294 (min) 2.12364 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 81.7841 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.26599 (min) 7.38359 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6222 (min) 33.4306 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000498704 (min) 0.000349323 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:16 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:16 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:16 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:16 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:16 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:16 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:16 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 0 2 2] 14:41:16 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 3 0 0] 14:41:16 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 469. 0.] [ 0. 0. 0. 0. 0.] [ 82. 0. 0. 538. 0.] [ 6. 0. 846. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:16 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:16 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:16 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0038459029054135506 14:41:16 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:16 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:16 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:16 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:16 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:16 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 65 14:41:16 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:16 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 65 elements 14:41:16 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:16 INFO opendrift.models.chemicaldrift:1861: partitioning: [68, 0, 288, 144, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:16 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:16 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:16 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:16 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:16 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:16 INFO opendrift.models.basemodel:2011: 2024-04-17 17:10:00.815900 - step 54 of 96 - 500 active elements (0 deactivated) 14:41:16 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:16 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:16 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.81659563856205 14:41:16 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.781304564044037 14:41:16 DEBUG opendrift.models.basemodel:2040: -36.379501752065515 <- z -> -0.3910421857932893 14:41:16 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:16 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:16 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:16 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:16 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:16 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 17:00:00 (before) 2024-04-17 18:00:00 (after) 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:18 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:18 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 61x32x7) for time after (2024-04-17 18:00:00) 14:41:18 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 17:00:00) in space (linearNDFast) 14:41:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:18 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 18:00:00) in space (linearNDFast) 14:41:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:18 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 17:00:00, weight 0.83) and after (2024-04-17 18:00:00, weight 0.17) in time 14:41:18 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:18 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.21870642503161 degrees. 14:41:18 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.21870642503161 degrees. 14:41:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:18 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:18 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:18 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:18 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0167562 (min) 0.334873 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.080058 (min) 0.388876 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.0605213 (min) 1.26273 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: y_wind: -1.93573 (min) 1.35326 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 86.9046 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.27007 (min) 7.36107 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6756 (min) 33.4477 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000495586 (min) 0.000526123 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:18 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:18 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:18 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:18 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:18 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:18 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2 0 0 2] 14:41:18 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 3 3 0] 14:41:18 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 471. 0.] [ 0. 0. 0. 0. 0.] [ 86. 0. 0. 592. 0.] [ 6. 0. 911. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:18 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:18 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:18 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.003231050754476349 14:41:18 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:18 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:18 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:18 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 55 14:41:18 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 55 elements 14:41:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:18 INFO opendrift.models.chemicaldrift:1861: partitioning: [70, 0, 284, 146, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:18 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:18 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:18 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:18 INFO opendrift.models.basemodel:2011: 2024-04-17 17:40:00.815900 - step 55 of 96 - 500 active elements (0 deactivated) 14:41:18 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:18 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:18 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.822464352150384 14:41:18 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.789185473832466 14:41:18 DEBUG opendrift.models.basemodel:2040: -38.56157954218826 <- z -> -0.43232364757440644 14:41:18 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:18 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 17:00:00 (before) 2024-04-17 18:00:00 (after) 14:41:18 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 17:00:00) in space (linearNDFast) 14:41:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:18 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 18:00:00) in space (linearNDFast) 14:41:18 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:18 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 17:00:00, weight 0.33) and after (2024-04-17 18:00:00, weight 0.67) in time 14:41:18 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:18 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.21082551638917 degrees. 14:41:18 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.21082551638917 degrees. 14:41:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:18 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:18 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:18 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:18 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:18 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:18 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:18 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:18 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0141114 (min) 0.31263 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0748063 (min) 0.374022 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.0782028 (min) 1.12589 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.06617 (min) 0.650247 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 91.2746 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.27088 (min) 7.37128 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5991 (min) 33.4035 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000459805 (min) 0.000451807 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:18 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:18 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:18 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:18 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:18 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:18 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:18 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 3 2] 14:41:18 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 0] 14:41:18 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 471. 0.] [ 0. 0. 0. 0. 0.] [ 89. 0. 0. 647. 0.] [ 7. 0. 966. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:18 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:18 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:18 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.007120307953167824 14:41:18 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:18 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:18 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:18 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 5 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:18 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:18 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:18 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 49 14:41:18 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:18 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 49 elements 14:41:18 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:18 INFO opendrift.models.chemicaldrift:1861: partitioning: [74, 0, 275, 151, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:18 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:18 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:18 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:18 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:18 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:18 INFO opendrift.models.basemodel:2011: 2024-04-17 18:10:00.815900 - step 56 of 96 - 500 active elements (0 deactivated) 14:41:18 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:18 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:18 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.82814503090136 14:41:18 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.797292462467396 14:41:18 DEBUG opendrift.models.basemodel:2040: -39.550866912264716 <- z -> -0.31464909977189387 14:41:18 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:18 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:18 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:18 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:18 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:18 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 18:00:00 (before) 2024-04-17 19:00:00 (after) 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:21 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:21 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 62x32x7) for time after (2024-04-17 19:00:00) 14:41:21 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 18:00:00) in space (linearNDFast) 14:41:21 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:21 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 19:00:00) in space (linearNDFast) 14:41:21 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:21 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 18:00:00, weight 0.83) and after (2024-04-17 19:00:00, weight 0.17) in time 14:41:21 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:21 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.20271852129906 degrees. 14:41:21 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.20271852129906 degrees. 14:41:21 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:21 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:21 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:21 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:21 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:21 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:21 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:21 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:21 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:21 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:21 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:21 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:21 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:21 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:21 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0178853 (min) 0.292885 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.0122321 (min) 0.367819 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.458008 (min) 0.854831 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.99682 (min) -0.483918 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 95.2239 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.27252 (min) 7.36858 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5841 (min) 33.3583 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00038211 (min) 0.00054542 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:21 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:21 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:21 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:21 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:21 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:21 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:21 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:21 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 2 2 2 0] 14:41:21 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 0 0 0 3] 14:41:21 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 473. 0.] [ 0. 0. 0. 0. 0.] [ 93. 0. 0. 702. 0.] [ 7. 0. 1015. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:21 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:21 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:21 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.018268353814952874 14:41:21 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:21 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:21 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:21 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 6 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 6 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 4 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 33 14:41:21 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 33 elements 14:41:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:21 INFO opendrift.models.chemicaldrift:1861: partitioning: [76, 0, 254, 170, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:21 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:21 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:21 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:21 INFO opendrift.models.basemodel:2011: 2024-04-17 18:40:00.815900 - step 57 of 96 - 500 active elements (0 deactivated) 14:41:21 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:21 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:21 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.833801081777814 14:41:21 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.80516532419106 14:41:21 DEBUG opendrift.models.basemodel:2040: -40.96763807740874 <- z -> 0.0 14:41:21 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:21 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:21 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:21 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:21 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 18:00:00 (before) 2024-04-17 19:00:00 (after) 14:41:21 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 18:00:00) in space (linearNDFast) 14:41:21 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:21 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 19:00:00) in space (linearNDFast) 14:41:21 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:21 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 18:00:00, weight 0.33) and after (2024-04-17 19:00:00, weight 0.67) in time 14:41:21 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:21 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.19484565419215 degrees. 14:41:21 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.19484565419215 degrees. 14:41:21 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:21 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:21 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:21 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:21 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:21 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:21 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:21 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:21 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:21 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:21 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:21 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:21 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:21 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:21 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:21 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:21 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:21 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0426281 (min) 0.261533 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0568655 (min) 0.367298 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.175225 (min) 0.590059 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: y_wind: -8.43411 (min) -1.96552 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 98.8718 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.27718 (min) 7.29189 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.6771 (min) 33.3533 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000250728 (min) 0.000618616 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:21 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:21 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:21 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:21 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:21 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:21 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:21 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:21 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2] 14:41:21 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0] 14:41:21 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 474. 0.] [ 0. 0. 0. 0. 0.] [ 95. 0. 0. 752. 0.] [ 7. 0. 1048. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:21 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:21 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:21 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.05165864397733425 14:41:21 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:21 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:21 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:21 DEBUG opendrift.models.oceandrift:618: 34 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 28 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:21 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:21 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:21 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5 14:41:21 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:21 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements 14:41:21 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:21 INFO opendrift.models.chemicaldrift:1861: partitioning: [77, 0, 242, 181, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:21 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:21 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:21 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:21 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:21 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:21 INFO opendrift.models.basemodel:2011: 2024-04-17 19:10:00.815900 - step 58 of 96 - 500 active elements (0 deactivated) 14:41:21 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:21 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:21 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.83973715496669 14:41:21 DEBUG opendrift.models.basemodel:2035: 10.498802283234006 <- longitude -> 10.812048432278921 14:41:21 DEBUG opendrift.models.basemodel:2040: -42.182171573073184 <- z -> -0.055920903465114025 14:41:21 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:21 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:21 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:21 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:21 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:21 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 19:00:00 (before) 2024-04-17 20:00:00 (after) 14:41:23 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:23 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:23 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:23 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:23 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:23 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:23 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 64x33x7) for time after (2024-04-17 20:00:00) 14:41:23 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 19:00:00) in space (linearNDFast) 14:41:23 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:23 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 20:00:00) in space (linearNDFast) 14:41:23 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:23 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 19:00:00, weight 0.83) and after (2024-04-17 20:00:00, weight 0.17) in time 14:41:23 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:23 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.18796254909543 degrees. 14:41:23 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.18796254909543 degrees. 14:41:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:23 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:23 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:23 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:23 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:23 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:23 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:23 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:23 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:23 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:23 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:23 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:23 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:23 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:23 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:23 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:23 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0705211 (min) 0.257097 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.114102 (min) 0.288492 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.925791 (min) 0.260372 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: y_wind: -10.9597 (min) -3.97168 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 102.466 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:23 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.28 (min) 7.31737 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.622 (min) 33.4898 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000328342 (min) 0.000563296 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:24 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:24 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:24 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:24 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:24 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:24 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2] 14:41:24 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0] 14:41:24 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 475. 0.] [ 0. 0. 0. 0. 0.] [ 97. 0. 0. 767. 0.] [ 7. 0. 1053. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:24 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:24 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:24 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.08685033427798797 14:41:24 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:24 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:24 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:24 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:24 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3 14:41:24 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements 14:41:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:24 INFO opendrift.models.chemicaldrift:1861: partitioning: [78, 0, 230, 192, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:24 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:24 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:24 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:24 INFO opendrift.models.basemodel:2011: 2024-04-17 19:40:00.815900 - step 59 of 96 - 500 active elements (0 deactivated) 14:41:24 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:24 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:24 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.84318232529098 14:41:24 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.817254804250927 14:41:24 DEBUG opendrift.models.basemodel:2040: -43.12244777088017 <- z -> 0.0 14:41:24 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:24 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:24 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:24 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:24 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 19:00:00 (before) 2024-04-17 20:00:00 (after) 14:41:24 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 19:00:00) in space (linearNDFast) 14:41:24 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:24 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 20:00:00) in space (linearNDFast) 14:41:24 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:24 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 19:00:00, weight 0.33) and after (2024-04-17 20:00:00, weight 0.67) in time 14:41:24 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:24 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.18275617574479 degrees. 14:41:24 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.18275617574479 degrees. 14:41:24 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:24 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:24 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:24 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:24 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:24 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:24 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:24 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:24 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:24 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:24 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:24 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:24 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:24 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:24 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:24 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:24 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:24 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:24 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:24 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:24 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.0986387 (min) 0.250576 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.16717 (min) 0.306212 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.78509 (min) -0.394112 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: y_wind: -11.7977 (min) -6.94566 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 104.404 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.28 (min) 7.29789 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5686 (min) 33.6582 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000272267 (min) 0.000542806 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:24 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:24 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:24 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:24 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:24 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:24 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:24 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 2 0 2 2] 14:41:24 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 0 3 0 0] 14:41:24 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 477. 0.] [ 0. 0. 0. 0. 0.] [ 101. 0. 0. 780. 0.] [ 7. 0. 1056. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:24 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:24 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:24 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.10137854181221485 14:41:24 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:24 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:24 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:24 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:24 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 29 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:24 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:24 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2 14:41:24 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:24 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements 14:41:24 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:24 INFO opendrift.models.chemicaldrift:1861: partitioning: [80, 0, 219, 201, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:24 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:24 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:24 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:24 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:24 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:24 INFO opendrift.models.basemodel:2011: 2024-04-17 20:10:00.815900 - step 60 of 96 - 500 active elements (0 deactivated) 14:41:24 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:24 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:24 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.846081549763916 14:41:24 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.82098442999227 14:41:24 DEBUG opendrift.models.basemodel:2040: -43.533110640547115 <- z -> 0.0 14:41:24 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:24 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:24 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:24 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:24 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:24 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 20:00:00 (before) 2024-04-17 21:00:00 (after) 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:26 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:26 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 65x33x7) for time after (2024-04-17 21:00:00) 14:41:26 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 20:00:00) in space (linearNDFast) 14:41:26 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:26 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 21:00:00) in space (linearNDFast) 14:41:26 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:26 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 20:00:00, weight 0.83) and after (2024-04-17 21:00:00, weight 0.17) in time 14:41:26 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:26 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.17902654584644 degrees. 14:41:26 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.17902654584644 degrees. 14:41:26 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:26 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:26 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:26 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:26 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:26 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:26 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:26 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:26 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:26 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:26 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:26 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:26 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:26 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:26 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.127911 (min) 0.248784 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.19021 (min) 0.363937 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.49844 (min) -0.492817 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: y_wind: -12.2349 (min) -8.24875 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 105.951 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.28163 (min) 7.30806 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.582 (min) 33.4605 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00015336 (min) 0.00061488 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:26 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:26 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:26 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:26 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:26 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:26 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 2 2 0] 14:41:26 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 0 0 3] 14:41:26 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 479. 0.] [ 0. 0. 0. 0. 0.] [ 105. 0. 0. 789. 0.] [ 7. 0. 1058. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:26 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:26 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:26 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.11049522146673381 14:41:26 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:26 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:26 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:26 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 24 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 30 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 26 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:26 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:26 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:26 INFO opendrift.models.chemicaldrift:1861: partitioning: [82, 0, 207, 211, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:26 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:26 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:26 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:26 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:26 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:26 INFO opendrift.models.basemodel:2011: 2024-04-17 20:40:00.815900 - step 61 of 96 - 500 active elements (0 deactivated) 14:41:26 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:26 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:26 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.84977330525546 14:41:26 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.824343911545629 14:41:26 DEBUG opendrift.models.basemodel:2040: -43.74865893691173 <- z -> -0.13460990918433188 14:41:26 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:26 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:26 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:26 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:26 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 20:00:00 (before) 2024-04-17 21:00:00 (after) 14:41:26 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 20:00:00) in space (linearNDFast) 14:41:26 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:26 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 21:00:00) in space (linearNDFast) 14:41:26 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:26 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 20:00:00, weight 0.33) and after (2024-04-17 21:00:00, weight 0.67) in time 14:41:26 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:26 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.175667064977716 degrees. 14:41:26 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.175667064977716 degrees. 14:41:26 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:26 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:26 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:26 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:26 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:26 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:26 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:26 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:26 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:26 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:26 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:26 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:26 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:26 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:26 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:26 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:26 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:26 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.111822 (min) 0.247165 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.211072 (min) 0.382909 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.88815 (min) 0.25658 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: y_wind: -10.5685 (min) -7.4585 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 107.883 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.28627 (min) 7.29122 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5238 (min) 33.7053 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000157151 (min) 0.000430874 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:26 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:26 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:26 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:26 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:26 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:26 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:26 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:26 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8 14:41:26 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2 0 2 3 2] 14:41:26 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0 3 0 0 0] 14:41:26 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 483. 0.] [ 0. 0. 0. 0. 0.] [ 108. 0. 0. 798. 0.] [ 8. 0. 1059. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:26 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:26 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:26 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.0849355058305145 14:41:26 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:26 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:26 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:26 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 25 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:26 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:26 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:26 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:26 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:26 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:26 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:26 INFO opendrift.models.chemicaldrift:1861: partitioning: [82, 0, 197, 221, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:26 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:26 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:26 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:26 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:26 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:26 INFO opendrift.models.basemodel:2011: 2024-04-17 21:10:00.815900 - step 62 of 96 - 500 active elements (0 deactivated) 14:41:26 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:26 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:26 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.85291186865238 14:41:26 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.828649056917124 14:41:26 DEBUG opendrift.models.basemodel:2040: -44.40504158419561 <- z -> -0.09745567459567189 14:41:26 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:26 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:26 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:26 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:26 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:26 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 21:00:00 (before) 2024-04-17 22:00:00 (after) 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:28 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:28 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 67x33x7) for time after (2024-04-17 22:00:00) 14:41:28 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 21:00:00) in space (linearNDFast) 14:41:28 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:28 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 22:00:00) in space (linearNDFast) 14:41:28 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:28 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 21:00:00, weight 0.83) and after (2024-04-17 22:00:00, weight 0.17) in time 14:41:28 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:28 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.1713619186209 degrees. 14:41:28 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.1713619186209 degrees. 14:41:28 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:28 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:28 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:28 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:28 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:28 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:28 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:28 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:28 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:28 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:28 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:28 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:28 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:28 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:28 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.129177 (min) 0.258744 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.187997 (min) 0.174337 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.00057 (min) 0.983692 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: y_wind: -9.84309 (min) -6.95465 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 109.272 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.28921 (min) 7.29008 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.1458 (min) 33.7105 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000177123 (min) 0.000460527 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:28 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:28 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:28 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:28 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:28 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:28 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:28 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 0 0] 14:41:28 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 3 3] 14:41:28 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 486. 0.] [ 0. 0. 0. 0. 0.] [ 110. 0. 0. 805. 0.] [ 8. 0. 1059. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:28 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:28 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:28 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:28 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:28 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.07537696821604173 14:41:28 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:28 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:28 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:28 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 27 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:28 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:28 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:28 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:28 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:28 INFO opendrift.models.chemicaldrift:1861: partitioning: [81, 0, 188, 231, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:28 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:28 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:28 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:28 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:28 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:28 INFO opendrift.models.basemodel:2011: 2024-04-17 21:40:00.815900 - step 63 of 96 - 500 active elements (0 deactivated) 14:41:28 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:28 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:28 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.855409982210254 14:41:28 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.832011150201883 14:41:28 DEBUG opendrift.models.basemodel:2040: -45.18870754425768 <- z -> 0.0 14:41:28 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:28 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:28 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:28 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:28 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 21:00:00 (before) 2024-04-17 22:00:00 (after) 14:41:28 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 21:00:00) in space (linearNDFast) 14:41:28 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:28 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 22:00:00) in space (linearNDFast) 14:41:28 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:28 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 21:00:00, weight 0.33) and after (2024-04-17 22:00:00, weight 0.67) in time 14:41:28 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:28 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.16799982783796 degrees. 14:41:28 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.16799982783796 degrees. 14:41:28 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:28 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:28 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:28 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:28 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:28 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:28 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:28 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:28 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:28 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:28 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:28 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:28 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:28 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:28 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:28 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:28 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:28 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.137641 (min) 0.25409 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.204647 (min) 0.313248 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.92067 (min) 1.4953 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: y_wind: -9.52194 (min) -5.68462 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 110.623 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.28992 (min) 7.28603 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.5502 (min) 33.7311 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000233495 (min) 0.000425813 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:28 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:28 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:28 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:28 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:28 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:28 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:28 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:28 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:28 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 0 0] 14:41:28 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 3 3] 14:41:28 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 490. 0.] [ 0. 0. 0. 0. 0.] [ 112. 0. 0. 813. 0.] [ 8. 0. 1060. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:28 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:28 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:28 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:28 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:28 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.06820812678819635 14:41:28 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:28 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:28 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:28 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 22 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 19 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:28 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:28 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:28 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:28 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2 14:41:28 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:28 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements 14:41:28 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:28 INFO opendrift.models.chemicaldrift:1861: partitioning: [79, 0, 181, 240, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:28 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:28 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:28 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:28 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:28 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:28 INFO opendrift.models.basemodel:2011: 2024-04-17 22:10:00.815900 - step 64 of 96 - 500 active elements (0 deactivated) 14:41:28 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:28 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:28 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.860453004265025 14:41:28 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.836621033646843 14:41:28 DEBUG opendrift.models.basemodel:2040: -45.5986816319439 <- z -> 0.0 14:41:28 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:28 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:28 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:28 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:28 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:28 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 22:00:00 (before) 2024-04-17 23:00:00 (after) 14:41:30 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:30 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:30 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:30 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:30 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:30 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:30 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 68x33x7) for time after (2024-04-17 23:00:00) 14:41:30 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 22:00:00) in space (linearNDFast) 14:41:30 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:30 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 23:00:00) in space (linearNDFast) 14:41:30 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:30 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 22:00:00, weight 0.83) and after (2024-04-17 23:00:00, weight 0.17) in time 14:41:30 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:30 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.16338993724139 degrees. 14:41:30 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.16338993724139 degrees. 14:41:30 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:30 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:30 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:30 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:30 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:30 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:30 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:30 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:30 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:30 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:30 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:30 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:30 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:30 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:30 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:30 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:30 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:30 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:30 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:30 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:30 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:30 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.176469 (min) 0.249047 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.186934 (min) 0.336775 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.91754 (min) 1.293 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: y_wind: -8.44582 (min) -3.88949 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 111.885 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.29163 (min) 7.31457 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.0504 (min) 33.7177 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000230153 (min) 0.000469395 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:30 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:31 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:31 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:31 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:31 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:31 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:31 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:31 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:31 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 0] 14:41:31 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 3] 14:41:31 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 494. 0.] [ 0. 0. 0. 0. 0.] [ 112. 0. 0. 820. 0.] [ 8. 0. 1062. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:31 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:31 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:31 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.053280017252947634 14:41:31 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:31 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:31 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:31 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 23 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 18 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 17 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 20 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:31 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:31 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 173, 252, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:31 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:31 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:31 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:31 INFO opendrift.models.basemodel:2011: 2024-04-17 22:40:00.815900 - step 65 of 96 - 500 active elements (0 deactivated) 14:41:31 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:31 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:31 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.865895720230526 14:41:31 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.841827532046205 14:41:31 DEBUG opendrift.models.basemodel:2040: -45.93201375147086 <- z -> 0.0 14:41:31 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:31 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:31 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:31 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:31 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 22:00:00 (before) 2024-04-17 23:00:00 (after) 14:41:31 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 22:00:00) in space (linearNDFast) 14:41:31 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:31 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-17 23:00:00) in space (linearNDFast) 14:41:31 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:31 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 22:00:00, weight 0.33) and after (2024-04-17 23:00:00, weight 0.67) in time 14:41:31 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:31 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.158183436042954 degrees. 14:41:31 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.158183436042954 degrees. 14:41:31 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:31 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:31 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:31 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:31 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:31 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:31 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:31 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:31 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:31 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:31 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:31 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:31 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:31 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:31 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:31 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:31 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:31 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:31 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:31 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:31 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.182636 (min) 0.231276 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.164029 (min) 0.23517 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.69701 (min) -0.389788 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: y_wind: -5.85121 (min) -1.44858 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 113.151 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.29646 (min) 7.31145 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.4632 (min) 33.6848 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000220851 (min) 0.000504092 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:31 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:31 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:31 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:31 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:31 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:31 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 0 14:41:31 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:31 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.029297459440501914 14:41:31 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:31 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:31 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:31 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:31 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:31 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:31 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:31 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 162, 263, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:31 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:31 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:31 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:31 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:31 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:31 INFO opendrift.models.basemodel:2011: 2024-04-17 23:10:00.815900 - step 66 of 96 - 500 active elements (0 deactivated) 14:41:31 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:31 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:31 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.869696361574235 14:41:31 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.846157487815248 14:41:31 DEBUG opendrift.models.basemodel:2040: -46.519121626922605 <- z -> -0.06987978454050325 14:41:31 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:31 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:31 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:31 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:31 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:31 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 23:00:00 (before) 2024-04-18 00:00:00 (after) 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:33 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:33 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 69x32x7) for time after (2024-04-18 00:00:00) 14:41:33 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 23:00:00) in space (linearNDFast) 14:41:33 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:33 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 00:00:00) in space (linearNDFast) 14:41:33 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:33 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 23:00:00, weight 0.83) and after (2024-04-18 00:00:00, weight 0.17) in time 14:41:33 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:33 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.15385347873285 degrees. 14:41:33 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.15385347873285 degrees. 14:41:33 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:33 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:33 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:33 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:33 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:33 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:33 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:33 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:33 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:33 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:33 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:33 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:33 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:33 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:33 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.241962 (min) 0.212521 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.175009 (min) 0.265134 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.66385 (min) -1.34573 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.51552 (min) -0.346255 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 114.466 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.30189 (min) 7.30946 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.9892 (min) 33.6533 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00023671 (min) 0.000511719 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:33 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:33 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:33 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:33 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:33 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:33 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:33 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0] 14:41:33 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3] 14:41:33 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 496. 0.] [ 0. 0. 0. 0. 0.] [ 113. 0. 0. 841. 0.] [ 8. 0. 1064. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:33 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:33 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:33 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:33 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:33 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017947133358759183 14:41:33 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:33 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:33 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2 14:41:33 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:33 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements 14:41:33 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:33 INFO opendrift.models.chemicaldrift:1861: partitioning: [74, 0, 157, 269, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:33 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:33 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:33 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:33 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:33 INFO opendrift.models.basemodel:2011: 2024-04-17 23:40:00.815900 - step 67 of 96 - 500 active elements (0 deactivated) 14:41:33 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:33 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:33 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.87398124868851 14:41:33 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.85117868771352 14:41:33 DEBUG opendrift.models.basemodel:2040: -47.11469052587678 <- z -> -0.17763738740154378 14:41:33 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:33 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:33 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:33 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:33 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-17 23:00:00 (before) 2024-04-18 00:00:00 (after) 14:41:33 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-17 23:00:00) in space (linearNDFast) 14:41:33 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:33 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 00:00:00) in space (linearNDFast) 14:41:33 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:33 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-17 23:00:00, weight 0.33) and after (2024-04-18 00:00:00, weight 0.67) in time 14:41:33 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:33 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.14883228214342 degrees. 14:41:33 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.14883228214342 degrees. 14:41:33 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:33 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:33 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:33 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:33 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:33 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:33 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:33 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:33 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:33 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:33 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:33 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:33 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:33 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:33 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:33 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:33 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:33 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.290333 (min) 0.189077 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.171387 (min) 0.326705 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.0137 (min) -1.59039 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.81306 (min) -1.88184 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 115.9 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.31066 (min) 7.30407 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.4942 (min) 33.6386 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000257507 (min) 0.000471142 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:33 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:33 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:33 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:33 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:33 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:33 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:33 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2 14:41:33 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0] 14:41:33 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3] 14:41:33 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 497. 0.] [ 0. 0. 0. 0. 0.] [ 114. 0. 0. 847. 0.] [ 8. 0. 1066. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:33 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:33 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:33 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:33 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:33 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013175767481013645 14:41:33 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:33 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:33 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:33 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:33 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:33 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:33 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:33 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:33 INFO opendrift.models.chemicaldrift:1861: partitioning: [74, 0, 151, 275, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:33 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:33 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:33 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:33 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:33 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:33 INFO opendrift.models.basemodel:2011: 2024-04-18 00:10:00.815900 - step 68 of 96 - 500 active elements (0 deactivated) 14:41:33 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:33 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:33 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.87817978325207 14:41:33 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.856323264525903 14:41:33 DEBUG opendrift.models.basemodel:2040: -47.566529973019776 <- z -> -0.25458480148309476 14:41:33 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:33 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:33 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:33 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:33 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:33 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 00:00:00 (before) 2024-04-18 01:00:00 (after) 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:35 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:35 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 71x32x7) for time after (2024-04-18 01:00:00) 14:41:35 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 00:00:00) in space (linearNDFast) 14:41:35 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 01:00:00) in space (linearNDFast) 14:41:35 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:35 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 00:00:00, weight 0.83) and after (2024-04-18 01:00:00, weight 0.17) in time 14:41:35 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:35 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.14368769381184 degrees. 14:41:35 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.14368769381184 degrees. 14:41:35 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:35 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:35 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:35 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:35 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:35 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:35 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:35 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:35 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:35 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:35 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:35 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:35 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:35 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:35 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.25328 (min) 0.193145 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.178955 (min) 0.436588 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.83945 (min) -1.07484 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.5838 (min) -2.16806 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 117.44 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.31779 (min) 7.30416 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.1272 (min) 33.5719 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000273443 (min) 0.00037356 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:35 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:35 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:35 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:35 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:35 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:35 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0] 14:41:35 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3] 14:41:35 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 499. 0.] [ 0. 0. 0. 0. 0.] [ 115. 0. 0. 853. 0.] [ 8. 0. 1067. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:35 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:35 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:35 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011437709931614394 14:41:35 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:35 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:35 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 0 14:41:35 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:35 INFO opendrift.models.chemicaldrift:1861: partitioning: [73, 0, 145, 282, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:35 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:35 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:35 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 5 elements to seafloor. 14:41:35 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:35 INFO opendrift.models.basemodel:2011: 2024-04-18 00:40:00.815900 - step 69 of 96 - 500 active elements (0 deactivated) 14:41:35 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:35 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:35 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.88188484842486 14:41:35 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.861204963143447 14:41:35 DEBUG opendrift.models.basemodel:2040: -48.060219338273264 <- z -> -0.5235600534249153 14:41:35 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:35 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:35 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:35 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:35 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 00:00:00 (before) 2024-04-18 01:00:00 (after) 14:41:35 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 00:00:00) in space (linearNDFast) 14:41:35 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:35 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 01:00:00) in space (linearNDFast) 14:41:35 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:35 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 00:00:00, weight 0.33) and after (2024-04-18 01:00:00, weight 0.67) in time 14:41:35 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:35 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.13880598653439 degrees. 14:41:35 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.13880598653439 degrees. 14:41:35 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:35 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:35 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:35 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:35 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:35 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:35 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:35 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:35 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:35 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:35 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:35 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:35 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:35 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:35 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:35 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:35 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.18791 (min) 0.230385 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.161524 (min) 0.515321 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.47189 (min) -0.927364 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.53044 (min) -1.91045 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 119.271 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.32279 (min) 7.30719 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 29.0863 (min) 33.5446 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000349402 (min) 0.000240873 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:35 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:35 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:35 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:35 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:35 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:35 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:35 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 11 14:41:35 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 0 0 0 0 0 0 2 0 0 0] 14:41:35 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 3 3 3 0 3 3 3] 14:41:35 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 508. 0.] [ 0. 0. 0. 0. 0.] [ 116. 0. 0. 858. 0.] [ 9. 0. 1067. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:35 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:35 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:35 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010263560911610882 14:41:35 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:35 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:35 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:35 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:35 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19 14:41:35 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:35 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements 14:41:35 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:35 INFO opendrift.models.chemicaldrift:1861: partitioning: [66, 0, 161, 273, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:35 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:35 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:35 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:35 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:35 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:35 INFO opendrift.models.basemodel:2011: 2024-04-18 01:10:00.815900 - step 70 of 96 - 500 active elements (0 deactivated) 14:41:35 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:35 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:35 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.88611065816732 14:41:35 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.866427233127547 14:41:35 DEBUG opendrift.models.basemodel:2040: -48.70818349784506 <- z -> -0.284883689116859 14:41:35 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:35 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:35 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:35 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:35 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:35 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 01:00:00 (before) 2024-04-18 02:00:00 (after) 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:37 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:37 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 72x32x7) for time after (2024-04-18 02:00:00) 14:41:37 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 01:00:00) in space (linearNDFast) 14:41:37 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:37 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 02:00:00) in space (linearNDFast) 14:41:37 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:37 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 01:00:00, weight 0.83) and after (2024-04-18 02:00:00, weight 0.17) in time 14:41:37 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:37 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.13358372732702 degrees. 14:41:37 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.13358372732702 degrees. 14:41:37 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:37 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:37 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:37 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:37 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:37 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:37 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:37 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:37 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:37 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:37 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:37 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:37 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:37 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:37 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.232505 (min) 0.278932 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.143411 (min) 0.585623 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: x_wind: -1.36133 (min) -0.358483 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.76399 (min) -1.79387 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 121.267 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.32779 (min) 7.32595 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.8017 (min) 33.7583 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000442063 (min) 0.00015949 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:37 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:37 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:37 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:37 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:37 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:37 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:37 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0 2] 14:41:37 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3 0] 14:41:37 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 511. 0.] [ 0. 0. 0. 0. 0.] [ 117. 0. 0. 860. 0.] [ 9. 0. 1086. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:37 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:37 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:37 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011197333425570775 14:41:37 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:37 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:37 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 21 14:41:37 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 21 elements 14:41:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:37 INFO opendrift.models.chemicaldrift:1861: partitioning: [64, 0, 166, 270, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:37 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:37 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:37 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 6 elements to seafloor. 14:41:37 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:37 INFO opendrift.models.basemodel:2011: 2024-04-18 01:40:00.815900 - step 71 of 96 - 500 active elements (0 deactivated) 14:41:37 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:37 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:37 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.89106086940985 14:41:37 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.872186166069483 14:41:37 DEBUG opendrift.models.basemodel:2040: -48.4711799621582 <- z -> -0.2362671886138444 14:41:37 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:37 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:37 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:37 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:37 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 01:00:00 (before) 2024-04-18 02:00:00 (after) 14:41:37 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 01:00:00) in space (linearNDFast) 14:41:37 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:37 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 02:00:00) in space (linearNDFast) 14:41:37 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:37 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 01:00:00, weight 0.33) and after (2024-04-18 02:00:00, weight 0.67) in time 14:41:37 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:37 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.12782479976758 degrees. 14:41:37 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.12782479976758 degrees. 14:41:37 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:37 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:37 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:37 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:37 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:37 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:37 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:37 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:37 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:37 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:37 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:37 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:37 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:37 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:37 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:37 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:37 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:37 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.144761 (min) 0.341948 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.126515 (min) 0.611802 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.838008 (min) -0.168831 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.17342 (min) -2.3908 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 122.927 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.33279 (min) 7.29151 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.8043 (min) 33.7003 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000541681 (min) 0.000161428 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:37 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:37 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:37 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:37 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:37 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:37 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:37 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8 14:41:37 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 0 0 0 2 0 2 0] 14:41:37 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0 3 0 3] 14:41:37 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 516. 0.] [ 0. 0. 0. 0. 0.] [ 119. 0. 0. 875. 0.] [ 10. 0. 1107. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:37 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:37 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:37 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012610678013527808 14:41:37 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:37 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:37 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:37 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:37 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16 14:41:37 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:37 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements 14:41:37 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:37 INFO opendrift.models.chemicaldrift:1861: partitioning: [62, 0, 169, 269, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:37 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:37 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:37 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:37 DEBUG opendrift.models.basemodel:730: Lifting 6 elements to seafloor. 14:41:37 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:37 INFO opendrift.models.basemodel:2011: 2024-04-18 02:10:00.815900 - step 72 of 96 - 500 active elements (0 deactivated) 14:41:37 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:37 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:37 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.89627010620676 14:41:37 DEBUG opendrift.models.basemodel:2035: 10.498802283234006 <- longitude -> 10.878217202310186 14:41:37 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.17624559094436587 14:41:37 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:37 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:37 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:37 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:37 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:37 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 02:00:00 (before) 2024-04-18 03:00:00 (after) 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:39 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:39 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 74x34x7) for time after (2024-04-18 03:00:00) 14:41:39 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 02:00:00) in space (linearNDFast) 14:41:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:39 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 03:00:00) in space (linearNDFast) 14:41:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 5 elements, expanding data 1 14:41:39 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 02:00:00, weight 0.83) and after (2024-04-18 03:00:00, weight 0.17) in time 14:41:39 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.121793746689725 degrees. 14:41:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.121793746689725 degrees. 14:41:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:39 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.107437 (min) 0.358027 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.114033 (min) 0.656787 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.587113 (min) 0.741116 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.4872 (min) -2.13121 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 124.815 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.33714 (min) 7.38486 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.7998 (min) 33.6058 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000505149 (min) 0.000521295 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:39 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:39 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:39 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:39 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:39 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:39 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:39 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2 14:41:39 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2] 14:41:39 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0] 14:41:39 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 516. 0.] [ 0. 0. 0. 0. 0.] [ 121. 0. 0. 886. 0.] [ 10. 0. 1123. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:39 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:39 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:39 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.014708204114886431 14:41:39 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:39 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:39 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12 14:41:39 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements 14:41:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:39 INFO opendrift.models.chemicaldrift:1861: partitioning: [64, 0, 171, 265, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:39 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:39 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:39 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:39 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:39 INFO opendrift.models.basemodel:2011: 2024-04-18 02:40:00.815900 - step 73 of 96 - 500 active elements (0 deactivated) 14:41:39 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:39 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:39 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.90083458885012 14:41:39 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.883705909097538 14:41:39 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.5599045041003798 14:41:39 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:39 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 02:00:00 (before) 2024-04-18 03:00:00 (after) 14:41:39 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 02:00:00) in space (linearNDFast) 14:41:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:39 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 03:00:00) in space (linearNDFast) 14:41:39 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:39 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 02:00:00, weight 0.33) and after (2024-04-18 03:00:00, weight 0.67) in time 14:41:39 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.11630504782899 degrees. 14:41:39 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.11630504782899 degrees. 14:41:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:39 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:39 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:39 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:39 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:39 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:39 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.168562 (min) 0.334368 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0976761 (min) 0.671075 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.734624 (min) 2.06169 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: y_wind: -5.14355 (min) -3.04472 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 127.321 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.3402 (min) 7.59514 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8301 (min) 33.6595 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000565157 (min) 0.00032456 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:39 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:39 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:39 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:39 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:39 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:39 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:39 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:39 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 0 0 0] 14:41:39 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 3 3 3] 14:41:39 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 519. 0.] [ 0. 0. 0. 0. 0.] [ 123. 0. 0. 894. 0.] [ 10. 0. 1135. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:39 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:39 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:39 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01926703026268974 14:41:39 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:39 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:39 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:39 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:39 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:39 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11 14:41:39 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:39 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements 14:41:39 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:39 INFO opendrift.models.chemicaldrift:1861: partitioning: [63, 0, 169, 268, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:39 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:39 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:39 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:39 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:41:39 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:39 INFO opendrift.models.basemodel:2011: 2024-04-18 03:10:00.815900 - step 74 of 96 - 500 active elements (0 deactivated) 14:41:39 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:39 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:39 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.90623854866773 14:41:39 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.889971367504899 14:41:39 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.2983151160725862 14:41:39 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:39 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:39 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:39 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:39 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:39 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 03:00:00 (before) 2024-04-18 04:00:00 (after) 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:41 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:41 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 76x34x7) for time after (2024-04-18 04:00:00) 14:41:41 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 03:00:00) in space (linearNDFast) 14:41:41 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:41 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 04:00:00) in space (linearNDFast) 14:41:41 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:41 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 03:00:00, weight 0.83) and after (2024-04-18 04:00:00, weight 0.17) in time 14:41:41 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:41 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.110039574403835 degrees. 14:41:41 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.110039574403835 degrees. 14:41:41 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:41 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:41 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:41 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:41 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:41 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:41 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:41 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:41 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:41 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:41 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:41 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:41 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:41 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:41 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.196884 (min) 0.336392 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0718074 (min) 0.683188 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.510405 (min) 2.27621 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: y_wind: -5.64814 (min) -3.5931 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 130.856 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34289 (min) 7.53016 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.6498 (min) 33.7144 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000806115 (min) 0.000395216 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:41 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:41 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:41 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:41 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:41 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7 14:41:41 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 2 0 2 0 0] 14:41:41 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3 3] 14:41:41 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 524. 0.] [ 0. 0. 0. 0. 0.] [ 125. 0. 0. 905. 0.] [ 10. 0. 1146. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:41 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:41 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:41 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:41 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:41 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02324481633526111 14:41:41 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:41 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:41 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:41 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 10 14:41:41 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:41 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 10 elements 14:41:41 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:41 INFO opendrift.models.chemicaldrift:1861: partitioning: [60, 0, 166, 274, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:41 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:41 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:41 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:41 INFO opendrift.models.basemodel:2011: 2024-04-18 03:40:00.815900 - step 75 of 96 - 500 active elements (0 deactivated) 14:41:41 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:41 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:41 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.90923144945265 14:41:41 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.894842417576164 14:41:41 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.0388162533405505 14:41:41 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:41 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:41 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:41 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:41 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 03:00:00 (before) 2024-04-18 04:00:00 (after) 14:41:41 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 03:00:00) in space (linearNDFast) 14:41:41 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:41 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 04:00:00) in space (linearNDFast) 14:41:41 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:41 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 03:00:00, weight 0.33) and after (2024-04-18 04:00:00, weight 0.67) in time 14:41:41 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:41 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.10516852938258 degrees. 14:41:41 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.10516852938258 degrees. 14:41:41 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:41 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:41 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:41 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:41 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:41 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:41 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:41 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:41 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:41 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:41 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:41 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:41 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:41 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:41 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:41 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:41 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:41 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.199309 (min) 0.374978 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0386988 (min) 0.67348 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: x_wind: -0.0991557 (min) 1.3764 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: y_wind: -5.15413 (min) -3.41274 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 132.52 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34483 (min) 7.49861 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.6893 (min) 33.6892 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.0010554 (min) 0.000706476 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:41 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:41 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:41 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:41 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:41 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:41 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:41 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 0] 14:41:41 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3] 14:41:41 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 527. 0.] [ 0. 0. 0. 0. 0.] [ 126. 0. 0. 916. 0.] [ 10. 0. 1156. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:41 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:41 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:41 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:41 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:41 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.019200798876829427 14:41:41 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:41 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:41 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:41 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:41 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:41 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 15 14:41:41 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:41 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 15 elements 14:41:41 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:41 INFO opendrift.models.chemicaldrift:1861: partitioning: [58, 0, 170, 272, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:41 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:41 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:41 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:41 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:41 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:41 INFO opendrift.models.basemodel:2011: 2024-04-18 04:10:00.815900 - step 76 of 96 - 500 active elements (0 deactivated) 14:41:41 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:41 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:41 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.91267015024739 14:41:41 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.900072284520531 14:41:41 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.41311571616214915 14:41:41 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:41 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:41 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:41 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:41 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:41 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 04:00:00 (before) 2024-04-18 05:00:00 (after) 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:43 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:43 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 77x35x7) for time after (2024-04-18 05:00:00) 14:41:43 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 04:00:00) in space (linearNDFast) 14:41:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:43 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 05:00:00) in space (linearNDFast) 14:41:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:43 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 04:00:00, weight 0.83) and after (2024-04-18 05:00:00, weight 0.17) in time 14:41:43 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.09993866756823 degrees. 14:41:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.09993866756823 degrees. 14:41:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:43 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.216968 (min) 0.329168 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.00431293 (min) 0.677453 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.23999 (min) 1.73858 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.84713 (min) -2.77666 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 134.499 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34612 (min) 7.53024 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.4033 (min) 33.4919 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00103775 (min) 0.000787787 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:43 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:43 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:43 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:43 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:43 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1 14:41:43 DEBUG opendrift.models.chemicaldrift:1452: old species: [2] 14:41:43 DEBUG opendrift.models.chemicaldrift:1453: new species: [0] 14:41:43 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 527. 0.] [ 0. 0. 0. 0. 0.] [ 127. 0. 0. 926. 0.] [ 10. 0. 1171. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:43 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:43 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:43 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01724672233145568 14:41:43 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:43 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:43 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:43 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 14 14:41:43 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 14 elements 14:41:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:43 INFO opendrift.models.chemicaldrift:1861: partitioning: [59, 0, 173, 268, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:43 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:43 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:43 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:43 INFO opendrift.models.basemodel:2011: 2024-04-18 04:40:00.815900 - step 77 of 96 - 500 active elements (0 deactivated) 14:41:43 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:43 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:43 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.91558875373565 14:41:43 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.905010586457417 14:41:43 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.19817522593658482 14:41:43 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:43 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 04:00:00 (before) 2024-04-18 05:00:00 (after) 14:41:43 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 04:00:00) in space (linearNDFast) 14:41:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:43 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 05:00:00) in space (linearNDFast) 14:41:43 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:43 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 04:00:00, weight 0.33) and after (2024-04-18 05:00:00, weight 0.67) in time 14:41:43 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.09500035708964 degrees. 14:41:43 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.09500035708964 degrees. 14:41:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:43 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:43 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:43 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:43 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:43 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:43 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.207884 (min) 0.332625 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: 0.00331643 (min) 0.663836 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.56216 (min) 1.60596 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.2728 (min) -2.651 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 136.046 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34612 (min) 7.48292 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.3247 (min) 33.6005 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.00075246 (min) 0.000875798 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:43 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:43 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:43 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:43 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:43 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:43 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:43 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:43 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1 14:41:43 DEBUG opendrift.models.chemicaldrift:1452: old species: [3] 14:41:43 DEBUG opendrift.models.chemicaldrift:1453: new species: [0] 14:41:43 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 527. 0.] [ 0. 0. 0. 0. 0.] [ 127. 0. 0. 936. 0.] [ 11. 0. 1185. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:43 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:43 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:43 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.019911622989026052 14:41:43 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:43 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:43 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:43 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:43 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:43 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 25 14:41:43 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:43 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 25 elements 14:41:43 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:43 INFO opendrift.models.chemicaldrift:1861: partitioning: [60, 0, 186, 254, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:43 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:43 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:43 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:43 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:43 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:43 INFO opendrift.models.basemodel:2011: 2024-04-18 05:10:00.815900 - step 78 of 96 - 500 active elements (0 deactivated) 14:41:43 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:43 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:43 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.91851410181784 14:41:43 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.909943431426905 14:41:43 DEBUG opendrift.models.basemodel:2040: -48.47117614746094 <- z -> -0.1602263572333995 14:41:43 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:43 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:43 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:43 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:43 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:43 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 05:00:00 (before) 2024-04-18 06:00:00 (after) 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:45 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:45 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 78x35x7) for time after (2024-04-18 06:00:00) 14:41:45 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 05:00:00) in space (linearNDFast) 14:41:45 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:45 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 06:00:00) in space (linearNDFast) 14:41:45 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:45 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 05:00:00, weight 0.83) and after (2024-04-18 06:00:00, weight 0.17) in time 14:41:45 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:45 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.090067500936115 degrees. 14:41:45 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.090067500936115 degrees. 14:41:45 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:45 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:45 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:45 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:45 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:45 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:45 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:45 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:45 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:45 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:45 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:45 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:45 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:45 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:45 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.235344 (min) 0.362449 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.00647675 (min) 0.626917 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.72169 (min) 2.19453 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.32246 (min) -2.45535 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 137.554 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34612 (min) 7.48583 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.3469 (min) 33.6603 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000382399 (min) 0.000860965 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:45 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:45 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:45 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:45 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:45 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:45 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 0] 14:41:45 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 3] 14:41:45 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 530. 0.] [ 0. 0. 0. 0. 0.] [ 127. 0. 0. 948. 0.] [ 11. 0. 1210. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:45 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:45 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:45 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.027159656112832664 14:41:45 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:45 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:45 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 28 14:41:45 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 28 elements 14:41:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:45 INFO opendrift.models.chemicaldrift:1861: partitioning: [57, 0, 203, 240, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:45 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:45 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:45 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:45 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:45 INFO opendrift.models.basemodel:2011: 2024-04-18 05:40:00.815900 - step 79 of 96 - 500 active elements (0 deactivated) 14:41:45 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:45 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:45 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.92112357224204 14:41:45 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.91450411323042 14:41:45 DEBUG opendrift.models.basemodel:2040: -48.59419463612654 <- z -> 0.0 14:41:45 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:45 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:45 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:45 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:45 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 05:00:00 (before) 2024-04-18 06:00:00 (after) 14:41:45 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 05:00:00) in space (linearNDFast) 14:41:45 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:45 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 06:00:00) in space (linearNDFast) 14:41:45 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:45 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 05:00:00, weight 0.33) and after (2024-04-18 06:00:00, weight 0.67) in time 14:41:45 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:45 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.085506822401285 degrees. 14:41:45 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.085506822401285 degrees. 14:41:45 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:45 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:45 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:45 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:45 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:45 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:45 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:45 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:45 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:45 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:45 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:45 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:45 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:45 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:45 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:45 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:45 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:45 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.240422 (min) 0.348536 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0430618 (min) 0.594442 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.38209 (min) 1.73059 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.38095 (min) -2.86062 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 138.824 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34612 (min) 7.50924 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.4942 (min) 33.6228 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000401383 (min) 0.00082024 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:45 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:45 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:45 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:45 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:45 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:45 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:45 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:45 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 0 14:41:45 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:45 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.025509996810379573 14:41:45 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:45 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:45 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:45 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:45 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 43 14:41:45 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:45 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 43 elements 14:41:45 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:45 INFO opendrift.models.chemicaldrift:1861: partitioning: [57, 0, 236, 207, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:45 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:45 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:45 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:45 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:45 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:45 INFO opendrift.models.basemodel:2011: 2024-04-18 06:10:00.815900 - step 80 of 96 - 500 active elements (0 deactivated) 14:41:45 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:45 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:45 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.92421459854369 14:41:45 DEBUG opendrift.models.basemodel:2035: 10.498802283234003 <- longitude -> 10.919339943166314 14:41:45 DEBUG opendrift.models.basemodel:2040: -49.64980763852033 <- z -> 0.0 14:41:45 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:45 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:45 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:45 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:45 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:45 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 06:00:00 (before) 2024-04-18 07:00:00 (after) 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:47 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:47 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 79x36x7) for time after (2024-04-18 07:00:00) 14:41:47 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 06:00:00) in space (linearNDFast) 14:41:47 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:47 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 07:00:00) in space (linearNDFast) 14:41:47 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:47 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 06:00:00, weight 0.83) and after (2024-04-18 07:00:00, weight 0.17) in time 14:41:47 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:47 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.08067098972859 degrees. 14:41:47 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.08067098972859 degrees. 14:41:47 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:47 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:47 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:47 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:47 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:47 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:47 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:47 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:47 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:47 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:47 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:47 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:47 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:47 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:47 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.248609 (min) 0.337067 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0589157 (min) 0.546906 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.31003 (min) 0.535623 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.60519 (min) -3.42934 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 140.378 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.347 (min) 7.55379 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8383 (min) 33.6552 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000366288 (min) 0.000833563 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:47 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:47 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:47 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:47 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:47 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:47 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:47 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2 14:41:47 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2] 14:41:47 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0] 14:41:47 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 531. 0.] [ 0. 0. 0. 0. 0.] [ 128. 0. 0. 969. 0.] [ 11. 0. 1281. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:47 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:47 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:47 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.028083846964680352 14:41:47 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:47 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:47 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:47 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 21 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:47 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 34 14:41:47 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 34 elements 14:41:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:47 INFO opendrift.models.chemicaldrift:1861: partitioning: [57, 0, 253, 190, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:47 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:47 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:47 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:47 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:47 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:47 INFO opendrift.models.basemodel:2011: 2024-04-18 06:40:00.815900 - step 81 of 96 - 500 active elements (0 deactivated) 14:41:47 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:47 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:47 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.92728374355422 14:41:47 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.923954663386635 14:41:47 DEBUG opendrift.models.basemodel:2040: -50.57919201623104 <- z -> 0.0 14:41:47 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:47 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:47 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:47 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:47 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 06:00:00 (before) 2024-04-18 07:00:00 (after) 14:41:47 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 06:00:00) in space (linearNDFast) 14:41:47 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:47 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 07:00:00) in space (linearNDFast) 14:41:47 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:47 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 06:00:00, weight 0.33) and after (2024-04-18 07:00:00, weight 0.67) in time 14:41:47 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:47 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.07605627079838 degrees. 14:41:47 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.07605627079838 degrees. 14:41:47 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:47 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:47 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:47 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:47 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:47 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:47 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:47 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:47 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:47 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:47 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:47 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:47 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:47 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:47 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:47 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:47 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:47 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.251598 (min) 0.338861 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.106211 (min) 0.477522 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.49079 (min) -2.14706 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.53759 (min) -4.21091 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 141.91 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.34961 (min) 7.50178 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.5954 (min) 33.6346 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000150377 (min) 0.000759423 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:47 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:47 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:47 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:47 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:47 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:47 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:47 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2 14:41:47 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2] 14:41:47 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0] 14:41:47 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 531. 0.] [ 0. 0. 0. 0. 0.] [ 130. 0. 0. 985. 0.] [ 11. 0. 1315. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:47 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:47 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:47 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.028857423196705027 14:41:47 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:47 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:47 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:47 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 14 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:47 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 12 14:41:47 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:47 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 12 elements 14:41:47 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:47 INFO opendrift.models.chemicaldrift:1861: partitioning: [59, 0, 252, 189, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:47 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:47 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:47 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:47 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:47 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:47 INFO opendrift.models.basemodel:2011: 2024-04-18 07:10:00.815900 - step 82 of 96 - 500 active elements (0 deactivated) 14:41:47 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:47 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:47 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.93078909515406 14:41:47 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.92866427285029 14:41:47 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> 0.0 14:41:47 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:47 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:47 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:47 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:47 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:47 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 07:00:00 (before) 2024-04-18 08:00:00 (after) 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:49 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:49 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 80x36x8) for time after (2024-04-18 08:00:00) 14:41:49 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 07:00:00) in space (linearNDFast) 14:41:49 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 08:00:00) in space (linearNDFast) 14:41:49 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:49 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 07:00:00, weight 0.83) and after (2024-04-18 08:00:00, weight 0.17) in time 14:41:49 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:49 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.07134666205816 degrees. 14:41:49 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.07134666205816 degrees. 14:41:49 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:49 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:49 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:49 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:49 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:49 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:49 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:49 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:49 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:49 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:49 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:49 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:49 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:49 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:49 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:49 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:49 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.261402 (min) 0.293988 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0736946 (min) 0.41567 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.49556 (min) -3.54186 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.80226 (min) -4.08392 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 143.602 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.35007 (min) 7.49768 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.6705 (min) 33.7562 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000171369 (min) 0.000737763 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:49 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:49 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:49 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:49 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:49 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:49 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2] 14:41:49 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0] 14:41:49 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 531. 0.] [ 0. 0. 0. 0. 0.] [ 133. 0. 0. 996. 0.] [ 11. 0. 1327. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:49 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:49 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:49 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:49 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:49 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.028117809967450943 14:41:49 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:49 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:49 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9 14:41:49 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:49 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements 14:41:49 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:49 INFO opendrift.models.chemicaldrift:1861: partitioning: [62, 0, 247, 191, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:49 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:49 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:49 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:49 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:49 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:49 INFO opendrift.models.basemodel:2011: 2024-04-18 07:40:00.815900 - step 83 of 96 - 500 active elements (0 deactivated) 14:41:49 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:49 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:49 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.934428700065126 14:41:49 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.933190026045416 14:41:49 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> 0.0 14:41:49 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:49 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:49 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:49 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:49 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 07:00:00 (before) 2024-04-18 08:00:00 (after) 14:41:49 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 07:00:00) in space (linearNDFast) 14:41:49 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:49 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 08:00:00) in space (linearNDFast) 14:41:49 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:49 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 07:00:00, weight 0.33) and after (2024-04-18 08:00:00, weight 0.67) in time 14:41:49 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:49 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.06682090662115 degrees. 14:41:49 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.06682090662115 degrees. 14:41:49 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:49 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:49 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:49 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:49 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:49 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:49 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:49 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:49 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:49 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:49 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:49 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:49 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:49 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:49 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:49 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:49 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:49 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:49 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.241795 (min) 0.258178 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0826678 (min) 0.388798 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.19457 (min) -3.83565 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.3945 (min) -3.59497 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 145.908 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.35106 (min) 7.45483 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8864 (min) 33.8814 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000217367 (min) 0.000779006 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:49 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:49 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:49 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:49 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:49 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:49 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:49 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:49 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:49 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2] 14:41:49 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0] 14:41:49 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 533. 0.] [ 0. 0. 0. 0. 0.] [ 136. 0. 0. 1007. 0.] [ 11. 0. 1336. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:49 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:49 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:49 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:49 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:49 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.025372393692293663 14:41:49 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:49 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:49 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:49 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:49 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 5 14:41:49 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:49 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 5 elements 14:41:49 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:49 INFO opendrift.models.chemicaldrift:1861: partitioning: [63, 0, 244, 193, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:49 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:49 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:49 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:49 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:49 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:49 INFO opendrift.models.basemodel:2011: 2024-04-18 08:10:00.815900 - step 84 of 96 - 500 active elements (0 deactivated) 14:41:49 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:49 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:49 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.93790275180143 14:41:49 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.937293157438845 14:41:49 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> 0.0 14:41:49 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:49 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:49 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:49 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:49 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:49 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 08:00:00 (before) 2024-04-18 09:00:00 (after) 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:51 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:51 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 81x36x8) for time after (2024-04-18 09:00:00) 14:41:51 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 08:00:00) in space (linearNDFast) 14:41:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:51 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 09:00:00) in space (linearNDFast) 14:41:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 08:00:00, weight 0.83) and after (2024-04-18 09:00:00, weight 0.17) in time 14:41:51 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.06271777581713 degrees. 14:41:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.06271777581713 degrees. 14:41:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:51 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.237668 (min) 0.213104 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.093874 (min) 0.377223 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: x_wind: -4.11059 (min) -3.28418 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: y_wind: -4.10477 (min) -3.13743 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 148.569 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.35273 (min) 7.51919 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8522 (min) 33.8586 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000221276 (min) 0.000881238 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:51 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:51 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:51 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:51 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:51 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:51 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 1 14:41:51 DEBUG opendrift.models.chemicaldrift:1452: old species: [2] 14:41:51 DEBUG opendrift.models.chemicaldrift:1453: new species: [0] 14:41:51 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 533. 0.] [ 0. 0. 0. 0. 0.] [ 137. 0. 0. 1012. 0.] [ 11. 0. 1341. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:51 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:51 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:51 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.02310952037126154 14:41:51 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:51 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:51 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:51 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 15 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:51 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6 14:41:51 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements 14:41:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:51 INFO opendrift.models.chemicaldrift:1861: partitioning: [64, 0, 240, 196, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:51 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:51 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:51 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:51 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:51 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:51 INFO opendrift.models.basemodel:2011: 2024-04-18 08:40:00.815900 - step 85 of 96 - 500 active elements (0 deactivated) 14:41:51 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:51 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:51 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.9417135505353 14:41:51 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.941682403472557 14:41:51 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> 0.0 14:41:51 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:51 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 08:00:00 (before) 2024-04-18 09:00:00 (after) 14:41:51 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 08:00:00) in space (linearNDFast) 14:41:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:51 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 09:00:00) in space (linearNDFast) 14:41:51 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:51 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 08:00:00, weight 0.33) and after (2024-04-18 09:00:00, weight 0.67) in time 14:41:51 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.05832852023096 degrees. 14:41:51 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.05832852023096 degrees. 14:41:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:51 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:51 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:51 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:51 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:51 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:51 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.240421 (min) 0.170632 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.103957 (min) 0.371494 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.8379 (min) -2.87906 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.83928 (min) -3.01312 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 151.131 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.35772 (min) 7.50674 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.4256 (min) 33.8664 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000150711 (min) 0.000844095 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:51 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:51 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:51 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:51 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:51 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:51 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:51 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:51 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 7 14:41:51 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 3 0 2 0 0 2] 14:41:51 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 3 3 0] 14:41:51 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 537. 0.] [ 0. 0. 0. 0. 0.] [ 139. 0. 0. 1021. 0.] [ 12. 0. 1347. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:51 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:51 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:51 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.020455689463710625 14:41:51 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:51 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:51 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 16 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 12 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:51 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:51 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:51 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:51 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 11 14:41:51 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:51 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 11 elements 14:41:51 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:51 INFO opendrift.models.chemicaldrift:1861: partitioning: [63, 0, 234, 203, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:51 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:51 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:51 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:51 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:51 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:51 INFO opendrift.models.basemodel:2011: 2024-04-18 09:10:00.815900 - step 86 of 96 - 500 active elements (0 deactivated) 14:41:51 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:51 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:51 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.94532365222676 14:41:51 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.945854531131513 14:41:51 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.027254161844591285 14:41:51 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:51 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:51 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:51 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:51 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:51 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 09:00:00 (before) 2024-04-18 10:00:00 (after) 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:53 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:53 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 82x36x8) for time after (2024-04-18 10:00:00) 14:41:53 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 09:00:00) in space (linearNDFast) 14:41:53 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:53 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 10:00:00) in space (linearNDFast) 14:41:53 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:53 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 09:00:00, weight 0.83) and after (2024-04-18 10:00:00, weight 0.17) in time 14:41:53 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:53 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.05415640088791 degrees. 14:41:53 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.05415640088791 degrees. 14:41:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:53 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:53 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:53 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:53 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.240608 (min) 0.15844 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0887741 (min) 0.385682 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.54012 (min) -2.47873 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.67943 (min) -2.66531 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 154.274 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.3623 (min) 7.55879 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8436 (min) 33.9465 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000103128 (min) 0.000842838 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:53 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:53 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:53 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:53 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:53 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:53 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 8 14:41:53 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2 2 0 2 2 2] 14:41:53 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 0 3 0 0 0] 14:41:53 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 538. 0.] [ 0. 0. 0. 0. 0.] [ 146. 0. 0. 1036. 0.] [ 12. 0. 1358. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:53 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:53 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:53 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01734507911687015 14:41:53 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:53 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:53 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:53 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 11 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 13 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 10 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 6 14:41:53 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 6 elements 14:41:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:53 INFO opendrift.models.chemicaldrift:1861: partitioning: [69, 0, 221, 210, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:53 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:53 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:53 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:53 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:53 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:53 INFO opendrift.models.basemodel:2011: 2024-04-18 09:40:00.815900 - step 87 of 96 - 500 active elements (0 deactivated) 14:41:53 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:53 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:53 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.94897802360232 14:41:53 DEBUG opendrift.models.basemodel:2035: 10.498802283234005 <- longitude -> 10.950288866393187 14:41:53 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> 0.0 14:41:53 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:53 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 09:00:00 (before) 2024-04-18 10:00:00 (after) 14:41:53 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 09:00:00) in space (linearNDFast) 14:41:53 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:53 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 10:00:00) in space (linearNDFast) 14:41:53 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:53 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 09:00:00, weight 0.33) and after (2024-04-18 10:00:00, weight 0.67) in time 14:41:53 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:53 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.04972206642761 degrees. 14:41:53 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.04972206642761 degrees. 14:41:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:53 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:53 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:53 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:53 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:53 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:53 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:53 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:53 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.245483 (min) 0.189666 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0945583 (min) 0.396293 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.89482 (min) -1.82436 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.91406 (min) -2.58628 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 157.973 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.36771 (min) 7.49185 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.4109 (min) 33.9684 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000184898 (min) 0.000772752 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:53 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:53 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:53 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:53 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:53 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:53 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:53 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:53 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:53 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 0 2 2 2] 14:41:53 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 3 0 0 0] 14:41:53 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 540. 0.] [ 0. 0. 0. 0. 0.] [ 150. 0. 0. 1048. 0.] [ 12. 0. 1364. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:53 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:53 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:53 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01712992773086768 14:41:53 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:53 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:53 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:53 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:53 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 3 14:41:53 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:53 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 3 elements 14:41:53 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:53 INFO opendrift.models.chemicaldrift:1861: partitioning: [71, 0, 215, 214, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:53 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:53 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:53 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:53 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:53 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:53 INFO opendrift.models.basemodel:2011: 2024-04-18 10:10:00.815900 - step 88 of 96 - 500 active elements (0 deactivated) 14:41:53 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:53 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:53 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.95300656457635 14:41:53 DEBUG opendrift.models.basemodel:2035: 10.498802283234001 <- longitude -> 10.955854187952344 14:41:53 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.1287509554020999 14:41:53 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:53 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:53 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:53 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:53 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:53 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 10:00:00 (before) 2024-04-18 11:00:00 (after) 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:55 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:55 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 84x37x8) for time after (2024-04-18 11:00:00) 14:41:55 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 10:00:00) in space (linearNDFast) 14:41:55 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:55 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 11:00:00) in space (linearNDFast) 14:41:55 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 3 elements, expanding data 1 14:41:55 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 10:00:00, weight 0.83) and after (2024-04-18 11:00:00, weight 0.17) in time 14:41:55 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:55 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.044156736179 degrees. 14:41:55 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.044156736179 degrees. 14:41:55 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:55 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:55 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:55 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:55 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:55 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:55 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:55 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:55 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:55 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:55 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:55 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:55 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:55 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:55 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.257606 (min) 0.244288 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0762 (min) 0.401609 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.88707 (min) -1.38958 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.94317 (min) -2.24667 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 163.048 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.37439 (min) 7.51758 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.1737 (min) 33.933 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000267715 (min) 0.000832305 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:55 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:55 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:55 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:55 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:55 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:55 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 2] 14:41:55 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 0] 14:41:55 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 541. 0.] [ 0. 0. 0. 0. 0.] [ 153. 0. 0. 1053. 0.] [ 12. 0. 1367. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:55 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:55 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:55 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.017262858288229377 14:41:55 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:55 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:55 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 9 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2 14:41:55 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements 14:41:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:55 INFO opendrift.models.chemicaldrift:1861: partitioning: [73, 0, 205, 222, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:55 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:55 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:55 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:55 INFO opendrift.models.basemodel:2011: 2024-04-18 10:40:00.815900 - step 89 of 96 - 500 active elements (0 deactivated) 14:41:55 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:55 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:55 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.95592669978335 14:41:55 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.963281184843753 14:41:55 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> 0.0 14:41:55 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:55 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:55 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:55 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:55 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 10:00:00 (before) 2024-04-18 11:00:00 (after) 14:41:55 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 10:00:00) in space (linearNDFast) 14:41:55 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:55 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 11:00:00) in space (linearNDFast) 14:41:55 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:55 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 10:00:00, weight 0.33) and after (2024-04-18 11:00:00, weight 0.67) in time 14:41:55 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:55 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.036729744791494 degrees. 14:41:55 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.036729744791494 degrees. 14:41:55 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:55 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:55 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:55 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:55 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:55 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:55 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:55 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:55 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:55 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:55 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:55 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:55 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:55 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:55 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:55 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:55 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:55 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.271545 (min) 0.235568 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0692894 (min) 0.40231 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.71218 (min) -1.06388 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.60704 (min) -2.09299 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 167.884 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.38393 (min) 7.57236 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.1625 (min) 33.9348 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000368142 (min) 0.000658901 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:55 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:55 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:55 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:55 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:55 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:55 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:55 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:55 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:55 DEBUG opendrift.models.chemicaldrift:1452: old species: [3 0 2 2] 14:41:55 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 0] 14:41:55 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 542. 0.] [ 0. 0. 0. 0. 0.] [ 155. 0. 0. 1062. 0.] [ 13. 0. 1369. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:55 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:55 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:55 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.013876556267287671 14:41:55 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:55 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:55 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:55 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:55 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:55 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:55 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 2 14:41:55 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:55 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 2 elements 14:41:55 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:55 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 193, 232, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:55 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:55 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:55 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:55 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:55 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:55 INFO opendrift.models.basemodel:2011: 2024-04-18 11:10:00.815900 - step 90 of 96 - 500 active elements (0 deactivated) 14:41:55 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:55 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:55 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.95971569093273 14:41:55 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.969624752671677 14:41:55 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.34961505434817974 14:41:55 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:55 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:55 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:55 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:55 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:55 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 11:00:00 (before) 2024-04-18 12:00:00 (after) 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:57 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:57 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 85x38x8) for time after (2024-04-18 12:00:00) 14:41:57 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 11:00:00) in space (linearNDFast) 14:41:57 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 12:00:00) in space (linearNDFast) 14:41:57 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 4 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:57 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 11:00:00, weight 0.83) and after (2024-04-18 12:00:00, weight 0.17) in time 14:41:57 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:57 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.030386171972786 degrees. 14:41:57 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.030386171972786 degrees. 14:41:57 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:57 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:57 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:57 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:57 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:57 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:57 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:57 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:57 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:57 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:57 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:57 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:57 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:57 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:57 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.286185 (min) 0.232048 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.065144 (min) 0.395782 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: x_wind: -2.92073 (min) -1.03877 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.44841 (min) -2.02337 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 172.266 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.39099 (min) 7.58283 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.0038 (min) 33.915 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000462449 (min) 0.00055979 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:57 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:57 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:57 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:57 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:57 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:57 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:41:57 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 2 2 0] 14:41:57 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 0 0 3] 14:41:57 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 545. 0.] [ 0. 0. 0. 0. 0.] [ 158. 0. 0. 1074. 0.] [ 13. 0. 1371. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:57 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:57 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:57 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:57 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:57 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.01189317604065129 14:41:57 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:57 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:57 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:57 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 1 14:41:57 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:57 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 1 elements 14:41:57 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:57 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 186, 239, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:57 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:57 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:57 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:57 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:57 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:57 INFO opendrift.models.basemodel:2011: 2024-04-18 11:40:00.815900 - step 91 of 96 - 500 active elements (0 deactivated) 14:41:57 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:57 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:57 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.96313736679861 14:41:57 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.976450436786765 14:41:57 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.20537186938775973 14:41:57 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:57 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:57 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:57 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:57 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 11:00:00 (before) 2024-04-18 12:00:00 (after) 14:41:57 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 11:00:00) in space (linearNDFast) 14:41:57 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:57 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 12:00:00) in space (linearNDFast) 14:41:57 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:57 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 11:00:00, weight 0.33) and after (2024-04-18 12:00:00, weight 0.67) in time 14:41:57 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:57 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.02356048946268 degrees. 14:41:57 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.02356048946268 degrees. 14:41:57 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:57 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:57 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:57 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:57 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:57 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:57 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:57 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:57 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:57 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:57 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:57 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:57 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:57 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:57 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:57 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:57 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:57 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.299474 (min) 0.24245 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0539217 (min) 0.420718 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.17021 (min) -1.35141 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.36007 (min) -2.19185 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 176.049 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.39599 (min) 7.61589 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.7411 (min) 33.908 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000553134 (min) 0.000497696 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:57 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:57 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:57 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:57 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:57 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:57 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:57 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:57 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:41:57 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 2 2 0] 14:41:57 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 0 0 3] 14:41:57 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 546. 0.] [ 0. 0. 0. 0. 0.] [ 161. 0. 0. 1079. 0.] [ 13. 0. 1372. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:57 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:57 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:57 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:57 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:57 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010781050100967287 14:41:57 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:57 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:57 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:57 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:57 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:57 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 9 14:41:57 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:57 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 9 elements 14:41:57 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:57 INFO opendrift.models.chemicaldrift:1861: partitioning: [77, 0, 185, 238, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:57 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:57 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:57 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:57 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:57 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:57 INFO opendrift.models.basemodel:2011: 2024-04-18 12:10:00.815900 - step 92 of 96 - 500 active elements (0 deactivated) 14:41:57 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:57 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:57 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.96535051305728 14:41:57 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.98318020484812 14:41:57 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.16522562068298416 14:41:57 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:57 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:57 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:57 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:57 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:57 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 12:00:00 (before) 2024-04-18 13:00:00 (after) 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:41:59 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:41:59 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 86x39x8) for time after (2024-04-18 13:00:00) 14:41:59 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 12:00:00) in space (linearNDFast) 14:41:59 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:59 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 13:00:00) in space (linearNDFast) 14:41:59 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 2 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:41:59 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 12:00:00, weight 0.83) and after (2024-04-18 13:00:00, weight 0.17) in time 14:41:59 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:59 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.016830716644364 degrees. 14:41:59 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.016830716644364 degrees. 14:41:59 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:59 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:59 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:59 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:59 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:59 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:59 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:59 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:59 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:59 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:59 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:59 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:59 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:59 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:59 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.315576 (min) 0.257747 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0520174 (min) 0.456875 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.35461 (min) -1.17001 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.41215 (min) -2.29904 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 179.382 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.40202 (min) 7.67242 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8741 (min) 33.9056 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000625157 (min) 0.000403621 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:59 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:59 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:59 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:59 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:59 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:59 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:59 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 3 14:41:59 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2 2] 14:41:59 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0 0] 14:41:59 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 547. 0.] [ 0. 0. 0. 0. 0.] [ 163. 0. 0. 1086. 0.] [ 13. 0. 1381. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:59 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:59 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:59 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:59 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:59 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011955329747904532 14:41:59 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:59 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:59 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18 14:41:59 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:59 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements 14:41:59 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:59 INFO opendrift.models.chemicaldrift:1861: partitioning: [78, 0, 192, 230, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:59 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:59 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:59 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:59 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:59 INFO opendrift.models.basemodel:2011: 2024-04-18 12:40:00.815900 - step 93 of 96 - 500 active elements (0 deactivated) 14:41:59 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:59 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:59 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.96849214046029 14:41:59 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.990489429491937 14:41:59 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.10989458472191627 14:41:59 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:59 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:59 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:59 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:59 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 12:00:00 (before) 2024-04-18 13:00:00 (after) 14:41:59 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 12:00:00) in space (linearNDFast) 14:41:59 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:59 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 13:00:00) in space (linearNDFast) 14:41:59 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:41:59 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 12:00:00, weight 0.33) and after (2024-04-18 13:00:00, weight 0.67) in time 14:41:59 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:41:59 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.00952148361076 degrees. 14:41:59 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.00952148361076 degrees. 14:41:59 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:59 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:41:59 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:41:59 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:59 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:41:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:59 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:59 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:59 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:41:59 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:41:59 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:59 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:41:59 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:41:59 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:41:59 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:41:59 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:41:59 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:41:59 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:41:59 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.331779 (min) 0.276077 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0681268 (min) 0.481722 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.4091 (min) -0.801919 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.25706 (min) -2.46551 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 182.354 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.41012 (min) 7.59875 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.8881 (min) 33.901 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000676651 (min) 0.000520498 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:41:59 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:41:59 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:41:59 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:41:59 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:41:59 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:41:59 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:41:59 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:41:59 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 5 14:41:59 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 0 0 3] 14:41:59 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 3 3 0] 14:41:59 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 550. 0.] [ 0. 0. 0. 0. 0.] [ 164. 0. 0. 1095. 0.] [ 14. 0. 1399. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:41:59 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:41:59 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:59 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:41:59 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:41:59 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012794811681069605 14:41:59 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:41:59 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:41:59 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:41:59 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 16 14:41:59 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:41:59 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 16 elements 14:41:59 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:41:59 INFO opendrift.models.chemicaldrift:1861: partitioning: [77, 0, 200, 223, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:41:59 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:41:59 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:41:59 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:41:59 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:41:59 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:41:59 INFO opendrift.models.basemodel:2011: 2024-04-18 13:10:00.815900 - step 94 of 96 - 500 active elements (0 deactivated) 14:41:59 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:41:59 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:41:59 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.97151565298452 14:41:59 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 10.99808482056179 14:41:59 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.1518821447281688 14:41:59 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:41:59 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:41:59 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:41:59 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:41:59 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:41:59 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 13:00:00 (before) 2024-04-18 14:00:00 (after) 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:42:01 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:42:01 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 88x40x8) for time after (2024-04-18 14:00:00) 14:42:01 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 13:00:00) in space (linearNDFast) 14:42:01 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:42:01 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 14:00:00) in space (linearNDFast) 14:42:01 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 6 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:01 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 13:00:00, weight 0.83) and after (2024-04-18 14:00:00, weight 0.17) in time 14:42:01 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:42:01 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.00192608965038 degrees. 14:42:01 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -59.00192608965038 degrees. 14:42:01 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:01 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:42:01 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:42:01 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:01 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:42:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:01 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:01 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:01 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:42:01 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:42:01 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:01 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:42:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:42:01 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:01 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:01 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:42:01 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.353405 (min) 0.284736 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.0801904 (min) 0.640366 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.40767 (min) -0.429467 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: y_wind: -3.15534 (min) -2.35547 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 185.063 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.41874 (min) 7.64711 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 28.1529 (min) 33.9166 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000698628 (min) 0.00065236 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:42:01 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:42:01 DEBUG opendrift.models.basemodel:725: No elements hit seafloor. 14:42:01 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:42:01 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:42:01 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:42:01 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:42:01 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 6 14:42:01 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 0 3 0 2 0] 14:42:01 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 3 0 3 0 3] 14:42:01 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 554. 0.] [ 0. 0. 0. 0. 0.] [ 165. 0. 0. 1102. 0.] [ 15. 0. 1415. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:42:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:42:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:42:01 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:42:01 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:42:01 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.012951134168328106 14:42:01 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:42:01 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:42:01 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:42:01 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 3 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 7 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 8 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:01 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 18 14:42:01 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:42:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 18 elements 14:42:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:42:01 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 204, 221, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:42:01 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:42:01 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:42:01 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 3 elements to seafloor. 14:42:01 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:42:01 INFO opendrift.models.basemodel:2011: 2024-04-18 13:40:00.815900 - step 95 of 96 - 500 active elements (0 deactivated) 14:42:01 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:42:01 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:42:01 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.97425947635346 14:42:01 DEBUG opendrift.models.basemodel:2035: 10.498802283233998 <- longitude -> 11.005717515571424 14:42:01 DEBUG opendrift.models.basemodel:2040: -51.41996765136719 <- z -> -0.6092291603445689 14:42:01 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:42:01 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:42:01 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:01 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:42:01 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 13:00:00 (before) 2024-04-18 14:00:00 (after) 14:42:01 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 13:00:00) in space (linearNDFast) 14:42:01 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:42:01 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 14:00:00) in space (linearNDFast) 14:42:01 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:42:01 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 13:00:00, weight 0.33) and after (2024-04-18 14:00:00, weight 0.67) in time 14:42:01 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:42:01 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -58.99429339625617 degrees. 14:42:01 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -58.99429339625617 degrees. 14:42:01 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:01 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:42:01 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:42:01 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:01 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:42:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:01 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:01 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:01 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:42:01 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:42:01 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:01 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:42:01 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:01 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:42:01 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:01 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:01 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:42:01 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:42:01 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.373633 (min) 0.35666 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.100971 (min) 0.715942 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.29462 (min) -0.00292769 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: y_wind: -2.8918 (min) -2.06312 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 187.495 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.4284 (min) 7.70624 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.5972 (min) 33.9239 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000657553 (min) 0.00084133 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:42:01 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:42:01 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:42:01 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:42:01 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:42:01 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:42:01 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 2 14:42:01 DEBUG opendrift.models.chemicaldrift:1452: old species: [0 2] 14:42:01 DEBUG opendrift.models.chemicaldrift:1453: new species: [3 0] 14:42:01 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 555. 0.] [ 0. 0. 0. 0. 0.] [ 166. 0. 0. 1115. 0.] [ 15. 0. 1433. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:42:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:42:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:42:01 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:42:01 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:42:01 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.011719585202321931 14:42:01 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:42:01 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:42:01 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:01 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 19 14:42:01 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:42:01 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 19 elements 14:42:01 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:42:01 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 208, 217, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:42:01 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:42:01 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:42:01 DEBUG opendrift.models.basemodel:866: to be seeded: 0, already seeded 500 14:42:01 DEBUG opendrift.models.basemodel:730: Lifting 4 elements to seafloor. 14:42:01 DEBUG opendrift.models.basemodel:2010: ====================================================================== 14:42:01 INFO opendrift.models.basemodel:2011: 2024-04-18 14:10:00.815900 - step 96 of 96 - 500 active elements (0 deactivated) 14:42:01 DEBUG opendrift.models.basemodel:2017: 0 elements scheduled. 14:42:01 DEBUG opendrift.models.basemodel:2019: ====================================================================== 14:42:01 DEBUG opendrift.models.basemodel:2030: 57.55540670442208 <- latitude -> 57.976800323906204 14:42:01 DEBUG opendrift.models.basemodel:2035: 10.498802283233996 <- longitude -> 11.013401834610486 14:42:01 DEBUG opendrift.models.basemodel:2040: -51.391078209724675 <- z -> -0.2908047072279089 14:42:01 DEBUG opendrift.models.basemodel:2041: --------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:608: Variable group ['sea_floor_depth_below_sea_level', 'x_wind', 'y_wind', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'y_sea_water_velocity', 'upward_sea_water_velocity'] 14:42:01 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:613: Calling reader https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be 14:42:01 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:01 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:01 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be covering 500 elements 14:42:01 DEBUG opendrift.readers.basereader.structured:222: Reader time: 2024-04-18 14:00:00 (before) 2024-04-18 15:00:00 (after) 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking sea_floor_depth_below_sea_level for invalid values 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking x_wind for invalid values 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking y_wind for invalid values 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking x_sea_water_velocity for invalid values 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking y_sea_water_velocity for invalid values 14:42:03 DEBUG opendrift.readers.interpolation.structured:53: Filled NaN-values toward seafloor for :['x_sea_water_velocity', 'sea_water_salinity', 'y_sea_water_velocity', 'sea_water_temperature', 'upward_sea_water_velocity'] 14:42:03 DEBUG opendrift.readers.basereader.structured:313: Fetched env-block (size 89x41x8) for time after (2024-04-18 15:00:00) 14:42:03 DEBUG opendrift.readers.basereader.structured:334: Interpolating before (2024-04-18 14:00:00) in space (linearNDFast) 14:42:03 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:42:03 DEBUG opendrift.readers.basereader.structured:340: Interpolating after (2024-04-18 15:00:00) in space (linearNDFast) 14:42:03 DEBUG opendrift.readers.interpolation.structured:80: Initialising interpolator. 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 8 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift:135: Linear2DInterpolator informational: NaN values for 1 elements, expanding data 1 14:42:03 DEBUG opendrift.readers.basereader.structured:355: Interpolating before (2024-04-18 14:00:00, weight 0.83) and after (2024-04-18 15:00:00, weight 0.17) in time 14:42:03 DEBUG opendrift.readers.basereader.structured:368: Interpolating profiles in time 14:42:03 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -58.98660907481616 degrees. 14:42:03 DEBUG opendrift.readers.basereader.variables:96: Rotating vectors between -59.50120880107802 and -58.98660907481616 degrees. 14:42:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['ocean_mixed_layer_thickness'] 14:42:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader constant_reader 14:42:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from constant_reader covering 500 elements 14:42:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:03 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:42:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:42:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:42:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:42:03 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:03 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:42:03 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 0.0001 for ocean_vertical_diffusivity for all profiles 14:42:03 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 10 for sea_water_temperature for 0 profiles 14:42:03 DEBUG opendrift.models.basemodel.environment:814: Using fallback value 34 for sea_water_salinity for 0 profiles 14:42:03 DEBUG opendrift.models.basemodel.environment:803: Using fallback value 8.1 for sea_water_ph_reported_on_total_scale for all profiles 14:42:03 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:905: x_sea_water_velocity: -0.410069 (min) 0.370053 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: y_sea_water_velocity: -0.127253 (min) 0.784971 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: sea_surface_height: 0 (min) 0 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: x_wind: -3.1297 (min) 0.369173 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: y_wind: -2.73271 (min) -1.8001 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: sea_floor_depth_below_sea_level: 8.99682 (min) 189.344 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: ocean_vertical_diffusivity: 0.0001 (min) 0.0001 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_temperature: 6.43754 (min) 7.75223 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_salinity: 27.5815 (min) 33.9447 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: upward_sea_water_velocity: -0.000590584 (min) 0.000859155 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: spm: 1 (min) 1 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: ocean_mixed_layer_thickness: 40 (min) 40 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: active_sediment_layer_thickness: 0.03 (min) 0.03 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: doc: 0 (min) 0 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: sea_water_ph_reported_on_total_scale: 8.1 (min) 8.1 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:905: pH_sediment: 6.9 (min) 6.9 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:42:03 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:03 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:42:03 DEBUG opendrift.models.basemodel:2082: Calling ChemicalDrift.update() 14:42:03 DEBUG opendrift.models.chemicaldrift:1667: Calculating overall degradation using overall rate constants 14:42:03 DEBUG opendrift.models.chemicaldrift:1722: Calculating: volatilization 14:42:03 INFO opendrift.models.chemicaldrift:1435: Number of transformations: 4 14:42:03 DEBUG opendrift.models.chemicaldrift:1452: old species: [2 0 2 0] 14:42:03 DEBUG opendrift.models.chemicaldrift:1453: new species: [0 3 0 3] 14:42:03 DEBUG opendrift.models.chemicaldrift:1460: Number of transformations total: [[ 0. 0. 0. 557. 0.] [ 0. 0. 0. 0. 0.] [ 168. 0. 0. 1129. 0.] [ 15. 0. 1452. 0. 0.] [ 0. 0. 0. 0. 0.]] 14:42:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 0 elements 14:42:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:42:03 DEBUG opendrift.models.chemicaldrift:1504: Adding uncertainty for desorption from sediments: 0.5 m 14:42:03 DEBUG opendrift.models.oceandrift:530: Using functional expression for diffusivity 14:42:03 DEBUG opendrift.models.oceandrift:535: Diffusivities are in range 0.0 to 0.010300371228491083 14:42:03 DEBUG opendrift.models.oceandrift:554: TSprofiles deactivated for vertical mixing 14:42:03 DEBUG opendrift.models.oceandrift:568: Vertical mixing module:windspeed_Large1994 14:42:03 DEBUG opendrift.models.oceandrift:571: Turbulent diffusion with random walk scheme using 30 fast time steps of dt=60s 14:42:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 2 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 2 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 5 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 3 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 4 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 6 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:618: 1 elements penetrated seafloor, lifting up 14:42:03 DEBUG opendrift.models.oceandrift:636: 1 elements reached seafloor, interacting with bottom 14:42:03 DEBUG opendrift.models.basemodel:730: Lifting 1 elements to seafloor. 14:42:03 DEBUG opendrift.models.oceandrift:618: 2 elements penetrated seafloor, lifting up 14:42:03 INFO opendrift.models.chemicaldrift:1633: Number of resuspended particles: 24 14:42:03 DEBUG opendrift.models.chemicaldrift:1638: Adding uncertainty for resuspension from sediments: 0.5 m 14:42:03 DEBUG opendrift.models.chemicaldrift:1539: Updated particle diameter for 24 elements 14:42:03 DEBUG opendrift.models.chemicaldrift:1543: Adding uncertainty for particle diameter: 5e-06 m 14:42:03 INFO opendrift.models.chemicaldrift:1861: partitioning: [75, 0, 220, 205, 0] ['LMM', 'Humic colloid', 'Particle reversible', 'Sediment reversible', 'Sediment slowly reversible'] 14:42:03 DEBUG opendrift.models.basemodel:1634: Horizontal diffusivity is 0, no random walk. 14:42:03 DEBUG opendrift.models.basemodel:2097: 500 active elements (0 deactivated) 14:42:03 DEBUG opendrift.models.basemodel:2126: Cleaning up 14:42:03 DEBUG opendrift.models.basemodel.environment:607: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:608: Variable group ['land_binary_mask'] 14:42:03 DEBUG opendrift.models.basemodel.environment:609: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:613: Calling reader global_landmask 14:42:03 DEBUG opendrift.models.basemodel.environment:614: ---------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:630: Data needed for 500 elements 14:42:03 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 500 elements 14:42:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before 14:42:03 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values 14:42:03 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed. 14:42:03 DEBUG opendrift.models.basemodel.environment:764: Obtained data for all elements. 14:42:03 DEBUG opendrift.models.basemodel.environment:777: --------------------------------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:778: Finished processing all variable groups 14:42:03 DEBUG opendrift.models.basemodel.environment:903: ------------ SUMMARY ------------- 14:42:03 DEBUG opendrift.models.basemodel.environment:905: land_binary_mask: 0 (min) 0 (max) 14:42:03 DEBUG opendrift.models.basemodel.environment:907: --------------------------------- 14:42:03 DEBUG opendrift.models.basemodel:686: No elements hit coastline. 14:42:03 DEBUG opendrift.models.basemodel:1683: No elements to deactivate 14:42:03 DEBUG opendrift.models.basemodel:92: Changed mode from Mode.Run to Mode.Result .. GENERATED FROM PYTHON SOURCE LINES 64-65 Print and plot results .. GENERATED FROM PYTHON SOURCE LINES 65-99 .. code-block:: Python print('Final speciation:') for isp,sp in enumerate(o.name_species): print ('{:32}: {:>6}'.format(sp,sum(o.elements.specie==isp))) print('Number of transformations:') for isp in range(o.nspecies): print('{}'.format(['{:>9}'.format(np.int32(item)) for item in o.ntransformations[isp,:]]) ) mass = o.get_property('mass') mass_d = o.get_property('mass_degraded') mass_v = o.get_property('mass_volatilized') m_pre = sum(mass[0][-1]) m_deg = sum(mass_d[0][-1]) m_vol = sum(mass_v[0][-1]) m_tot = m_pre + m_deg + m_vol print('Mass budget for target chemical:') print('mass preserved : {:.3f}'.format(m_pre * 1e-6),' g {:.3f}'.format(m_pre/m_tot*100),'%') print('mass degraded : {:.3f}'.format(m_deg * 1e-6),' g {:.3f}'.format(m_deg/m_tot*100),'%') print('mass volatilized : {:.3f}'.format(m_vol * 1e-6),' g {:.3f}'.format(m_vol/m_tot*100),'%') legend=['dissolved', '', 'SPM', 'sediment', ''] o.animation_profile(color='specie', markersize='mass', markersize_scaling=30, alpha=.5, vmin=0,vmax=o.nspecies-1, legend = legend, legend_loc = 3, fps = 10 ) .. rst-class:: sphx-glr-script-out .. code-block:: none Final speciation: LMM : 75 Humic colloid : 0 Particle reversible : 220 Sediment reversible : 205 Sediment slowly reversible : 0 Number of transformations: [' 0', ' 0', ' 0', ' 557', ' 0'] [' 0', ' 0', ' 0', ' 0', ' 0'] [' 168', ' 0', ' 0', ' 1139', ' 0'] [' 15', ' 0', ' 1476', ' 0', ' 0'] [' 0', ' 0', ' 0', ' 0', ' 0'] Mass budget for target chemical: mass preserved : 0.549 g 54.851 % mass degraded : 0.450 g 45.030 % mass volatilized : 0.001 g 0.118 % 14:42:03 DEBUG opendrift.models.basemodel:3010: Saving animation.. 14:42:03 INFO opendrift.models.basemodel:4563: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_0.gif... 14:42:13 DEBUG opendrift.models.basemodel:4601: MPLBACKEND = agg 14:42:13 DEBUG opendrift.models.basemodel:4602: DISPLAY = None 14:42:13 DEBUG opendrift.models.basemodel:4603: Time to save animation: 0:00:09.943897 14:42:13 INFO opendrift.models.basemodel:3217: Time to make animation: 0:00:10.108329 .. GENERATED FROM PYTHON SOURCE LINES 100-101 .. image:: /gallery/animations/example_chemicaldrift_0.gif .. GENERATED FROM PYTHON SOURCE LINES 101-113 .. code-block:: Python o.animation(color='specie', markersize='mass', markersize_scaling=100, alpha=.5, vmin=0,vmax=o.nspecies-1, colorbar=False, fast = True, legend = legend, legend_loc = 3, fps=10 ) .. rst-class:: sphx-glr-script-out .. code-block:: none 14:42:13 DEBUG opendrift.models.basemodel:2333: Setting up map: corners=None, fast=True, lscale=None 14:42:13 WARNING opendrift.models.basemodel:2379: Plotting fast. This will make your plots less accurate. 14:42:15 DEBUG opendrift.models.basemodel:3010: Saving animation.. 14:42:15 INFO opendrift.models.basemodel:4563: Saving animation to /root/project/docs/source/gallery/animations/example_chemicaldrift_1.gif... 14:43:01 DEBUG opendrift.models.basemodel:4601: MPLBACKEND = agg 14:43:01 DEBUG opendrift.models.basemodel:4602: DISPLAY = None 14:43:01 DEBUG opendrift.models.basemodel:4603: Time to save animation: 0:00:45.536441 14:43:01 INFO opendrift.models.basemodel:3003: Time to make animation: 0:00:47.208958 .. GENERATED FROM PYTHON SOURCE LINES 114-115 .. image:: /gallery/animations/example_chemicaldrift_1.gif .. GENERATED FROM PYTHON SOURCE LINES 118-122 .. code-block:: Python o.plot_mass(legend = legend, time_unit = 'hours', title = 'Chemical mass budget') .. image-sg:: /gallery/images/sphx_glr_example_chemicaldrift_001.png :alt: Chemical mass budget :srcset: /gallery/images/sphx_glr_example_chemicaldrift_001.png :class: sphx-glr-single-img .. rst-class:: sphx-glr-script-out .. code-block:: none dissolved : 0.06492793749999999g (11.837062481206324%) SPM : 0.279341625g (50.92698761186903%) sediment : 0.20424437499999998g (37.23594990692465%) /root/project/opendrift/models/chemicaldrift.py:3006: UserWarning: set_ticklabels() should only be used with a fixed number of ticks, i.e. after set_ticks() or using a FixedLocator. ax.axes.get_xaxis().set_ticklabels(np.round(ax.axes.get_xticks() * time_conversion_factor)) .. rst-class:: sphx-glr-timing **Total running time of the script:** (3 minutes 4.452 seconds) .. _sphx_glr_download_gallery_example_chemicaldrift.py: .. only:: html .. container:: sphx-glr-footer sphx-glr-footer-example .. container:: sphx-glr-download sphx-glr-download-jupyter :download:`Download Jupyter notebook: example_chemicaldrift.ipynb ` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: example_chemicaldrift.py ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_