Note

Go to the end to download the full example code.

Seafloor oil spill

from datetime import timedelta
from opendrift.readers import reader_netCDF_CF_generic
from opendrift.models.openoil import OpenOil

o = OpenOil(loglevel=20)  # Set loglevel to 0 for debug information

# Norkyst
reader_norkyst = reader_netCDF_CF_generic.Reader(o.test_data_folder() + '14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc')
#reader_norkyst = reader_netCDF_CF_generic.Reader('https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be')

o.add_reader([reader_norkyst])
o.set_config('environment:fallback:x_wind', 3)
o.set_config('environment:fallback:y_wind', 7)
o.set_config('drift:vertical_mixing', True)

20:22:42 INFO    opendrift.models.basemodel:515: OpenDriftSimulation initialised (version 1.12.0 / v1.12.0-26-g390e945)
20:22:42 INFO    opendrift.readers:58: Opening file with xr.open_dataset
20:22:42 INFO    opendrift.readers.reader_netCDF_CF_generic:337: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}

Setting the range of droplet sizes for the seafloor release

o.set_config('seed:droplet_size_distribution','uniform')
o.set_config('seed:droplet_diameter_min_subsea', 0.0001)
o.set_config('seed:droplet_diameter_max_subsea', 0.0005)

# 'normal' and 'lognormal' distributions can also be specified
# o.set_config('seed:droplet_size_distribution','lognormal')
# o.set_config('seed:droplet_diameter_mu',0.001)  # 1 mm
# o.set_config('seed:droplet_diameter_sigma',0.0008) # 0.8 mm

Seeding some particles

time = [reader_norkyst.start_time,
        reader_norkyst.start_time + timedelta(hours=1)]
o.seed_elements(lon=4.5, lat=62.0, z='seafloor', radius=0, number=3000,
                time=time, oil_type='GENERIC DIESEL')

20:22:42 INFO    opendrift.models.openoil.openoil:1658: Using uniform droplet size distribution between 0.0001 and 0.0005 m for elements seeded below sea surface.
20:22:42 INFO    opendrift.models.openoil.adios.dirjs:86: Querying ADIOS database for oil: GENERIC DIESEL
20:22:42 INFO    opendrift.models.openoil.openoil:1715: Using density 855.84763 and viscosity 8.644570579524653e-06 of oiltype GENERIC DIESEL
20:22:42 INFO    opendrift.models.basemodel.environment:218: Adding a dynamical landmask with max. priority based on assumed maximum speed of 1.3 m/s. Adding a customised landmask may be faster...
20:22:46 INFO    opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers:
20:22:46 INFO    opendrift.models.basemodel.environment:248:    x_wind: 3.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    y_wind: 7.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    upward_sea_water_velocity: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_significant_height: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_stokes_drift_x_velocity: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_stokes_drift_y_velocity: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_period_at_variance_spectral_density_maximum: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_ice_area_fraction: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_ice_x_velocity: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    sea_ice_y_velocity: 0.000000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    ocean_vertical_diffusivity: 0.020000
20:22:46 INFO    opendrift.models.basemodel.environment:248:    ocean_mixed_layer_thickness: 50.000000
20:22:46 WARNING opendrift.models.basemodel.environment:458: Simulation has no simulation_extent, cannot check reader coverage

Running model with a small timestep to resolve the boyant rising

o.run(duration=timedelta(hours=6), time_step=60, time_step_output=60)

20:22:48 INFO    opendrift.models.basemodel:935: Using existing reader for land_binary_mask
20:22:48 INFO    opendrift.models.basemodel:946: All points are in ocean
20:22:48 INFO    opendrift.models.openoil.openoil:684: Oil-water surface tension is 0.030314 Nm
20:22:48 INFO    opendrift.models.openoil.openoil:697: Max water fraction not available for GENERIC DIESEL, using default
20:22:48 WARNING opendrift.models.basemodel:729: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
20:22:48 INFO    opendrift.models.basemodel:2035: 2016-01-14 00:00:00 - step 1 of 360 - 50 active elements (0 deactivated)
20:22:48 INFO    opendrift.models.basemodel:2035: 2016-01-14 00:01:00 - step 2 of 360 - 100 active elements (0 deactivated)
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20:23:02 WARNING opendrift.models.basemodel:2327: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
20:23:02 WARNING opendrift.models.basemodel:2133: The simulation stopped before requested end time was reached.
20:23:02 INFO    opendrift.models.basemodel:2135: ========================
20:23:02 INFO    opendrift.models.basemodel:2136: End of simulation:
20:23:02 INFO    opendrift.models.basemodel:2137: No more active or scheduled elements, quitting.
20:23:02 INFO    opendrift.models.basemodel:2138: Traceback (most recent call last):
  File "/root/project/opendrift/models/basemodel/__init__.py", line 2100, in run
    raise ValueError(
ValueError: No more active or scheduled elements, quitting.

20:23:02 INFO    opendrift.models.basemodel:2139: "Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']", 'The simulation stopped before requested end time was reached.'

20:23:02 INFO    opendrift.models.basemodel:2142: ========================

Print and plot results

print(o)

o.animation_profile(markersize='z', color='z')

===========================
--------------------
Reader performance:
--------------------
global_landmask
 0:00:00.0  total
 0:00:00.0  preparing
 0:00:00.0  reading
 0:00:00.0  masking
--------------------
Performance:
   19.6 total time
    4.4 configuration
    1.3 preparing main loop
      0.0 moving elements to ocean
   13.8 main loop
      5.4 updating elements
        0.0 oil weathering
          0.0 updating viscosities
          0.0 updating densities
          0.0 evaporation
          0.0 emulsification
          0.0 dispersion
        4.9 vertical mixing
    0.0 cleaning up
--------------------
===========================
Model:  OpenOil     (OpenDrift version 1.12.0)
        0 active Oil particles  (3000 deactivated, 0 scheduled)
-------------------
Environment variables:
  -----
  land_binary_mask
     1) global_landmask
  -----
Readers not added for the following variables:
  ocean_mixed_layer_thickness
  ocean_vertical_diffusivity
  sea_floor_depth_below_sea_level
  sea_ice_area_fraction
  sea_ice_x_velocity
  sea_ice_y_velocity
  sea_surface_height
  sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment
  sea_surface_wave_period_at_variance_spectral_density_maximum
  sea_surface_wave_significant_height
  sea_surface_wave_stokes_drift_x_velocity
  sea_surface_wave_stokes_drift_y_velocity
  sea_water_salinity
  sea_water_temperature
  upward_sea_water_velocity
  x_sea_water_velocity
  x_wind
  y_sea_water_velocity
  y_wind

Discarded readers:
  /root/project/tests/test_data/14Jan2016_NorKyst_z_3d/NorKyst-800m_ZDEPTHS_his_00_3Dsubset.nc (ends before simuation is finished)

Time:
        Start: 2016-01-14 00:00:00 UTC
        Present: 2016-01-14 02:01:00 UTC
        Calculation steps: 122 * 0:01:00 - total time: 2:01:00
        Output steps: 123 * 0:01:00
-------------------
"Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']", 'The simulation stopped before requested end time was reached.'
===========================

20:23:02 INFO    opendrift.models.basemodel:4613: Saving animation to /root/project/docs/source/gallery/animations/example_oilspill_seafloor_0.gif...
20:23:18 INFO    opendrift.models.basemodel:3251: Time to make animation: 0:00:16.166482
../_images/example_oilspill_seafloor_0.gif 
o.animate_vertical_distribution(bins=30, subsamplingstep=5)

20:23:20 INFO    opendrift.models.basemodel:4613: Saving animation to /root/project/docs/source/gallery/animations/example_oilspill_seafloor_1.gif...
20:23:42 INFO    opendrift.models.oceandrift:713: Time to make animation: 0:00:24.311407
../_images/example_oilspill_seafloor_1.gif 
o.plot_oil_budget()
GENERIC DIESEL (855.8 kg/m3) - 2016-01-14 00:00 to 2016-01-14 02:01

Total running time of the script: (1 minutes 7.698 seconds)

Gallery generated by Sphinx-Gallery