Note
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SCHISM native reader
import numpy as np
from datetime import timedelta, datetime
from opendrift.readers import reader_schism_native
from opendrift.readers import reader_global_landmask
from opendrift.models.oceandrift import OceanDrift
MODEL
o = OceanDrift(loglevel=0) # Set loglevel to 0 for debug information
13:59:26 DEBUG opendrift.models.basemodel:625: Adding 18 config items from basemodel
13:59:26 DEBUG opendrift.models.basemodel:625: Adding 5 config items from basemodel
13:59:26 DEBUG opendrift.models.basemodel:625: Adding 48 config items from basemodel
13:59:26 INFO opendrift.models.basemodel:539: OpenDriftSimulation initialised (version 1.10.7 / v1.10.6-119-g1da5bec)
13:59:26 DEBUG opendrift.models.basemodel:625: Adding 15 config items from oceandrift
13:59:26 DEBUG opendrift.models.basemodel:637: Overwriting config item seed:z
READERS
Creating and adding reader using a native SCHISM netcdf output file SCHISM reader
reader_landmask = reader_global_landmask.Reader()
# NZTM proj4 string found at https://spatialreference.org/ref/epsg/nzgd2000-new-zealand-transverse-mercator-2000/
proj4str_nztm = '+proj=tmerc +lat_0=0 +lon_0=173 +k=0.9996 +x_0=1600000 +y_0=10000000 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs'
schism_native = reader_schism_native.Reader(
filename = 'https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc',
proj4 = proj4str_nztm,
use_3d = True)
# schism_native.plot_mesh(variable = ['sea_floor_depth_below_sea_level']) # check reader was correctly loaded
o.add_reader([reader_landmask,schism_native])
o.set_config('general:use_auto_landmask', False) # prevent opendrift from making a new dynamical landmask with global_landmask
# Seed elements at defined positions, depth and time
o.seed_elements(lon=174.046669, lat=-40.928116, radius=20, number=100,
z=np.linspace(0,-10, 100), time=schism_native.start_time)
o.seed_elements(lon= 173.8839, lat=-40.9160, radius=20, number=100,
z=np.linspace(0,-10, 100), time=schism_native.start_time)
o.seed_elements(lon=174.2940, lat=-41.0888, radius=20, number=100,
z=np.linspace(0,-10, 100), time=schism_native.start_time)
o.disable_vertical_motion() #Deactivate any vertical processes/advection"""
13:59:26 DEBUG opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
13:59:32 INFO opendrift.readers.reader_schism_native:109: Opening dataset: https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:32 INFO opendrift.readers.reader_schism_native:115: Opening file with dataset
13:59:33 DEBUG opendrift.readers.reader_schism_native:145: Finding coordinate variables.
13:59:35 DEBUG opendrift.readers.basereader:176: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
13:59:35 DEBUG opendrift.readers.reader_schism_native:259: Building CKDtree of static 2D nodes for nearest-neighbor search
13:59:35 DEBUG opendrift.readers.reader_schism_native:263: Building convex hull of nodes for particles in-mesh checks
13:59:35 DEBUG opendrift.models.basemodel:952: Added reader global_landmask
13:59:35 DEBUG opendrift.models.basemodel:952: Added reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 INFO opendrift.models.oceandrift:346: Setting config: drift:vertical_advection -> False
13:59:35 INFO opendrift.models.oceandrift:346: Setting config: drift:vertical_mixing -> False
Running model
o.run(time_step=900,
end_time = schism_native.start_time+timedelta(days=0.1))
# outfile='schism_native_output.nc')
# Print and plot results
print(o)
o.plot(fast=True)
o.animation()
o.animation_profile()
13:59:35 DEBUG opendrift.models.basemodel:2545:
------------------------------------------------------
Software and hardware:
OpenDrift version 1.10.7
Platform: Linux, 5.15.0-1039-aws
68.56807327270508 GB memory
36 processors (x86_64)
NumPy version 1.25.2
SciPy version 1.11.2
Matplotlib version 3.7.2
NetCDF4 version 1.6.1
Xarray version 2023.8.0
Python version 3.11.4 | packaged by conda-forge | (main, Jun 10 2023, 18:08:17) [GCC 12.2.0]
------------------------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:2562: No output file is specified, neglecting export_buffer_length
13:59:35 INFO opendrift.models.basemodel:2591: Fallback values will be used for the following variables which have no readers:
13:59:35 INFO opendrift.models.basemodel:2594: x_wind: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: y_wind: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: ocean_vertical_diffusivity: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wave_significant_height: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wave_stokes_drift_x_velocity: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wave_stokes_drift_y_velocity: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wave_period_at_variance_spectral_density_maximum: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_swell_wave_to_direction: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_swell_wave_significant_height: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wind_wave_to_direction: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wind_wave_mean_period: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: sea_surface_wind_wave_significant_height: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: surface_downward_x_stress: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: surface_downward_y_stress: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: turbulent_kinetic_energy: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: turbulent_generic_length_scale: 0.000000
13:59:35 INFO opendrift.models.basemodel:2594: ocean_mixed_layer_thickness: 50.000000
13:59:35 DEBUG opendrift.models.basemodel:2718: Preparing readers for simulation coverage ([173.78658236004176, -41.16232081232844, 174.39130460284886, -40.842619220630546]) and time (2008-01-01 00:30:00 to 2008-01-01 02:45:00)
13:59:35 DEBUG opendrift.models.basemodel:2722: Preparing global_landmask
13:59:35 DEBUG opendrift.readers.basereader:188: Nothing more to prepare for global_landmask
13:59:35 DEBUG opendrift.models.basemodel:2722: Preparing https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 DEBUG opendrift.readers.basereader:188: Nothing more to prepare for https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 INFO opendrift.models.basemodel:1701: Using existing reader for land_binary_mask
13:59:35 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
13:59:35 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
13:59:35 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
13:59:35 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
13:59:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
13:59:35 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
13:59:35 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
13:59:35 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
13:59:35 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
13:59:35 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
13:59:35 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
13:59:35 DEBUG opendrift.models.basemodel:1526: ---------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1527: 0 active elements
13:59:35 INFO opendrift.models.basemodel:1713: All points are in ocean
13:59:35 DEBUG opendrift.models.basemodel:1658: to be seeded: 300, already seeded 0
13:59:35 DEBUG opendrift.models.basemodel:1676: Released 300 new elements.
13:59:35 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level']
13:59:35 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
13:59:35 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
13:59:35 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 00:30:00 (before)
2008-01-01 01:00:00 (after)
13:59:35 DEBUG opendrift.readers.reader_schism_native:343: reading constant data from unstructured reader sea_floor_depth_below_sea_level
13:59:35 DEBUG opendrift.readers.reader_schism_native:542: initialize ReaderBlockUnstruct var_block_before
13:59:35 DEBUG opendrift.readers.reader_schism_native:925: saving readers 2D (horizontal) KDtree to ReaderBlockUnstruct
13:59:35 DEBUG opendrift.readers.reader_schism_native:551: Fetched env-block (size 149233x149233x149233) for time before (2008-01-01 00:30:00)
13:59:35 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 00:30:00) in space (linearNDFast)
13:59:35 DEBUG opendrift.readers.reader_schism_native:664: No time interpolation needed - right on time.
13:59:35 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
13:59:35 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
13:59:35 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
13:59:35 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
13:59:35 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 15.0017 (min) 74.046 (max)
13:59:35 DEBUG opendrift.models.basemodel:1526: ---------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1527: 300 active elements
13:59:35 DEBUG opendrift.models.basemodel:1538: -41.089348 <- latitude -> -40.915592
13:59:35 DEBUG opendrift.models.basemodel:1543: 173.88324 <- longitude -> 174.29465
13:59:35 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
13:59:35 DEBUG opendrift.models.basemodel:1549: ---------------------------------
13:59:35 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
13:59:35 DEBUG opendrift.models.basemodel:2881: ======================================================================
13:59:35 INFO opendrift.models.basemodel:2882: 2008-01-01 00:30:00 - step 1 of 9 - 300 active elements (0 deactivated)
13:59:35 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
13:59:35 DEBUG opendrift.models.basemodel:2890: ======================================================================
13:59:35 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
13:59:35 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
13:59:35 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
13:59:35 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
13:59:35 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
13:59:35 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
13:59:35 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
13:59:35 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
13:59:35 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
13:59:35 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
13:59:35 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
13:59:35 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
13:59:35 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:35 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 00:30:00 (before)
2008-01-01 01:00:00 (after)
13:59:35 DEBUG opendrift.readers.reader_schism_native:343: reading constant data from unstructured reader sea_floor_depth_below_sea_level
13:59:35 DEBUG opendrift.readers.reader_schism_native:349: reading 3D data from unstructured reader upward_sea_water_velocity
13:59:40 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader x_sea_water_velocity
13:59:45 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader y_sea_water_velocity
13:59:49 DEBUG opendrift.readers.reader_schism_native:542: initialize ReaderBlockUnstruct var_block_before
13:59:49 DEBUG opendrift.readers.reader_schism_native:925: saving readers 2D (horizontal) KDtree to ReaderBlockUnstruct
13:59:49 DEBUG opendrift.readers.reader_schism_native:935: Compute time-varying KDtree for 3D nearest-neighbor search (i.e using zcor)
13:59:50 DEBUG opendrift.readers.reader_schism_native:551: Fetched env-block (size 149233x149233x149233) for time before (2008-01-01 00:30:00)
13:59:50 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 00:30:00) in space (linearNDFast)
13:59:50 DEBUG opendrift.readers.reader_schism_native:664: No time interpolation needed - right on time.
13:59:50 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
13:59:50 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
13:59:50 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
13:59:50 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8509596907996719 and -0.578507548367259 degrees.
13:59:50 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
13:59:50 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
13:59:50 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
13:59:50 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
13:59:50 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
13:59:50 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.30496 (min) 0.0345555 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.149951 (min) 0.107663 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.000698592 (min) 0.0035493 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 15.0017 (min) 74.046 (max)
13:59:50 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
13:59:50 DEBUG opendrift.models.basemodel:1526: ---------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1527: 300 active elements
13:59:50 DEBUG opendrift.models.basemodel:1538: -41.089348 <- latitude -> -40.915592
13:59:50 DEBUG opendrift.models.basemodel:1543: 173.88324 <- longitude -> 174.29465
13:59:50 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
13:59:50 DEBUG opendrift.models.basemodel:1549: ---------------------------------
13:59:50 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
13:59:50 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
13:59:50 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
13:59:50 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
13:59:50 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
13:59:50 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
13:59:50 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
13:59:50 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
13:59:50 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
13:59:50 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
13:59:50 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
13:59:50 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
13:59:50 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
13:59:50 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
13:59:50 DEBUG opendrift.models.basemodel:2881: ======================================================================
13:59:50 INFO opendrift.models.basemodel:2882: 2008-01-01 00:45:00 - step 2 of 9 - 300 active elements (0 deactivated)
13:59:50 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
13:59:50 DEBUG opendrift.models.basemodel:2890: ======================================================================
13:59:50 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
13:59:50 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
13:59:50 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
13:59:50 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
13:59:50 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
13:59:50 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
13:59:50 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
13:59:50 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
13:59:50 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
13:59:50 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:50 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
13:59:50 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
13:59:50 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
13:59:50 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
13:59:50 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 00:30:00 (before)
2008-01-01 01:00:00 (after)
13:59:50 DEBUG opendrift.readers.reader_schism_native:343: reading constant data from unstructured reader sea_floor_depth_below_sea_level
13:59:50 DEBUG opendrift.readers.reader_schism_native:349: reading 3D data from unstructured reader upward_sea_water_velocity
13:59:54 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader x_sea_water_velocity
13:59:58 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader y_sea_water_velocity
14:00:02 DEBUG opendrift.readers.reader_schism_native:566: initialize ReaderBlockUnstruct var_block_after
14:00:02 DEBUG opendrift.readers.reader_schism_native:925: saving readers 2D (horizontal) KDtree to ReaderBlockUnstruct
14:00:02 DEBUG opendrift.readers.reader_schism_native:935: Compute time-varying KDtree for 3D nearest-neighbor search (i.e using zcor)
14:00:03 DEBUG opendrift.readers.reader_schism_native:577: Fetched env-block (size 149233x149233x149233) for time after (2008-01-01 01:00:00)
14:00:03 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 00:30:00) in space (linearNDFast)
14:00:03 DEBUG opendrift.readers.reader_schism_native:606: Interpolating after (2008-01-01 01:00:00) in space (linearNDFast)
14:00:03 DEBUG opendrift.readers.reader_schism_native:621: Interpolating before (2008-01-01 00:30:00, weight 0.50) and
after (2008-01-01 01:00:00, weight 0.50) in time
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8511387192887403 and -0.5777240434297449 degrees.
14:00:03 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:03 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:03 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:03 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:03 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:03 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.286947 (min) 0.0479919 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.131052 (min) 0.126287 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.000621651 (min) 0.00194884 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 15.0126 (min) 70.6919 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:03 DEBUG opendrift.models.basemodel:1538: -41.08932910275323 <- latitude -> -40.91640122030731
14:00:03 DEBUG opendrift.models.basemodel:1543: 173.88203002875653 <- longitude -> 174.29491999965018
14:00:03 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:03 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:03 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:03 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:03 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:03 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:03 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:03 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:03 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:03 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:03 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:03 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:03 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:03 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:03 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:03 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:03 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:03 INFO opendrift.models.basemodel:2882: 2008-01-01 01:00:00 - step 3 of 9 - 300 active elements (0 deactivated)
14:00:03 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:03 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:03 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:03 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:03 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:03 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:03 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:03 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:03 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:03 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:03 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:03 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:03 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 01:00:00 (before)
2008-01-01 01:30:00 (after)
14:00:03 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 01:00:00) in space (linearNDFast)
14:00:03 DEBUG opendrift.readers.reader_schism_native:664: No time interpolation needed - right on time.
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8514708066796428 and -0.576864316101359 degrees.
14:00:03 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:03 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:03 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:03 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:03 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:03 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.264079 (min) 0.0626803 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.114077 (min) 0.125723 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.000524679 (min) 0.00125092 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.9912 (min) 68.2496 (max)
14:00:03 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:03 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:03 DEBUG opendrift.models.basemodel:1538: -41.08940917786362 <- latitude -> -40.91708668562816
14:00:03 DEBUG opendrift.models.basemodel:1543: 173.88068628281255 <- longitude -> 174.29542356560117
14:00:03 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:03 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:03 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:03 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:03 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:03 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:03 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:03 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:03 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:03 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:03 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:03 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:03 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:03 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:03 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:03 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:03 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:03 INFO opendrift.models.basemodel:2882: 2008-01-01 01:15:00 - step 4 of 9 - 300 active elements (0 deactivated)
14:00:03 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:03 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:03 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:03 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:03 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:03 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:03 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:03 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:03 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:03 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:03 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:03 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:03 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:03 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:03 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:03 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:03 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 01:00:00 (before)
2008-01-01 01:30:00 (after)
14:00:03 DEBUG opendrift.readers.reader_schism_native:343: reading constant data from unstructured reader sea_floor_depth_below_sea_level
14:00:03 DEBUG opendrift.readers.reader_schism_native:349: reading 3D data from unstructured reader upward_sea_water_velocity
14:00:07 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader x_sea_water_velocity
14:00:11 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader y_sea_water_velocity
14:00:15 DEBUG opendrift.readers.reader_schism_native:566: initialize ReaderBlockUnstruct var_block_after
14:00:15 DEBUG opendrift.readers.reader_schism_native:925: saving readers 2D (horizontal) KDtree to ReaderBlockUnstruct
14:00:15 DEBUG opendrift.readers.reader_schism_native:935: Compute time-varying KDtree for 3D nearest-neighbor search (i.e using zcor)
14:00:16 DEBUG opendrift.readers.reader_schism_native:577: Fetched env-block (size 149233x149233x149233) for time after (2008-01-01 01:30:00)
14:00:16 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 01:00:00) in space (linearNDFast)
14:00:16 DEBUG opendrift.readers.reader_schism_native:606: Interpolating after (2008-01-01 01:30:00) in space (linearNDFast)
14:00:16 DEBUG opendrift.readers.reader_schism_native:621: Interpolating before (2008-01-01 01:00:00, weight 0.50) and
after (2008-01-01 01:30:00, weight 0.50) in time
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8519146823860861 and -0.5759763405738649 degrees.
14:00:16 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:16 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:16 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:16 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:16 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:16 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.211725 (min) 0.071528 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.11247 (min) 0.161214 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.001029 (min) 0.000646276 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.9725 (min) 66.3621 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:16 DEBUG opendrift.models.basemodel:1538: -41.08958806256448 <- latitude -> -40.91757867546373
14:00:16 DEBUG opendrift.models.basemodel:1543: 173.87931439712534 <- longitude -> 174.29609496473103
14:00:16 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:16 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:16 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:16 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:16 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:16 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:16 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:16 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:16 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:16 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:16 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:16 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:16 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:16 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:16 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:16 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:16 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:16 INFO opendrift.models.basemodel:2882: 2008-01-01 01:30:00 - step 5 of 9 - 300 active elements (0 deactivated)
14:00:16 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:16 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:16 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:16 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:16 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:16 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:16 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:16 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:16 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:16 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:16 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:16 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:16 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 01:30:00 (before)
2008-01-01 02:00:00 (after)
14:00:16 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 01:30:00) in space (linearNDFast)
14:00:16 DEBUG opendrift.readers.reader_schism_native:664: No time interpolation needed - right on time.
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8524118629061551 and -0.5751932745690117 degrees.
14:00:16 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:16 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:16 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:16 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:16 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:16 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.164051 (min) 0.0801302 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.0929248 (min) 0.127591 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.00110893 (min) 0.00030505 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.9532 (min) 71.6028 (max)
14:00:16 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:16 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:16 DEBUG opendrift.models.basemodel:1538: -41.08992754881217 <- latitude -> -40.918049622958705
14:00:16 DEBUG opendrift.models.basemodel:1543: 173.87810549817854 <- longitude -> 174.2968425346531
14:00:16 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:16 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:16 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:16 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:16 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:16 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:16 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:16 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:16 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:16 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:16 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:16 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:16 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:16 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:16 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:16 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:16 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:16 INFO opendrift.models.basemodel:2882: 2008-01-01 01:45:00 - step 6 of 9 - 300 active elements (0 deactivated)
14:00:16 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:16 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:16 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:16 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:16 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:16 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:16 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:16 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:16 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:16 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:16 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:16 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:16 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:16 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:16 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:16 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:16 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 01:30:00 (before)
2008-01-01 02:00:00 (after)
14:00:16 DEBUG opendrift.readers.reader_schism_native:343: reading constant data from unstructured reader sea_floor_depth_below_sea_level
14:00:16 DEBUG opendrift.readers.reader_schism_native:349: reading 3D data from unstructured reader upward_sea_water_velocity
14:00:20 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader x_sea_water_velocity
14:00:24 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader y_sea_water_velocity
14:00:28 DEBUG opendrift.readers.reader_schism_native:566: initialize ReaderBlockUnstruct var_block_after
14:00:28 DEBUG opendrift.readers.reader_schism_native:925: saving readers 2D (horizontal) KDtree to ReaderBlockUnstruct
14:00:28 DEBUG opendrift.readers.reader_schism_native:935: Compute time-varying KDtree for 3D nearest-neighbor search (i.e using zcor)
14:00:29 DEBUG opendrift.readers.reader_schism_native:577: Fetched env-block (size 149233x149233x149233) for time after (2008-01-01 02:00:00)
14:00:29 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 01:30:00) in space (linearNDFast)
14:00:29 DEBUG opendrift.readers.reader_schism_native:606: Interpolating after (2008-01-01 02:00:00) in space (linearNDFast)
14:00:29 DEBUG opendrift.readers.reader_schism_native:621: Interpolating before (2008-01-01 01:30:00, weight 0.50) and
after (2008-01-01 02:00:00, weight 0.50) in time
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8529280248250712 and -0.5745030435549384 degrees.
14:00:29 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:29 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:29 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:29 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:29 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:29 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.143503 (min) 0.0907263 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.106097 (min) 0.153984 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.00105162 (min) 0.00241269 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.9122 (min) 72.3233 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:29 DEBUG opendrift.models.basemodel:1538: -41.090442697745374 <- latitude -> -40.91831032887059
14:00:29 DEBUG opendrift.models.basemodel:1543: 173.87703861901397 <- longitude -> 174.29761509459578
14:00:29 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:29 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:29 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:29 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:29 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:29 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:29 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:29 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:29 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:29 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:29 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:29 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:29 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:29 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:29 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:29 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:29 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:29 INFO opendrift.models.basemodel:2882: 2008-01-01 02:00:00 - step 7 of 9 - 300 active elements (0 deactivated)
14:00:29 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:29 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:29 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:29 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:29 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:29 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:29 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:29 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:29 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:29 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:29 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:29 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:29 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 02:00:00 (before)
2008-01-01 02:30:00 (after)
14:00:29 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 02:00:00) in space (linearNDFast)
14:00:29 DEBUG opendrift.readers.reader_schism_native:664: No time interpolation needed - right on time.
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8535228027880395 and -0.5738991118963265 degrees.
14:00:29 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:29 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:29 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:29 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:29 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:29 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.119909 (min) 0.101955 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.131457 (min) 0.195151 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.000943503 (min) 0.00290554 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.9098 (min) 72.3628 (max)
14:00:29 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:29 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:29 DEBUG opendrift.models.basemodel:1538: -41.09110321239751 <- latitude -> -40.91854339450141
14:00:29 DEBUG opendrift.models.basemodel:1543: 173.8761045800315 <- longitude -> 174.29850223049547
14:00:29 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:29 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:29 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:29 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:29 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:29 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:29 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:29 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:29 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:29 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:29 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:29 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:29 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:29 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:29 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:29 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:29 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:29 INFO opendrift.models.basemodel:2882: 2008-01-01 02:15:00 - step 8 of 9 - 300 active elements (0 deactivated)
14:00:29 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:29 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:29 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:29 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:29 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:29 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:29 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:29 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:29 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:29 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:29 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:29 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:29 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:29 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:29 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:29 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:29 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 02:00:00 (before)
2008-01-01 02:30:00 (after)
14:00:29 DEBUG opendrift.readers.reader_schism_native:343: reading constant data from unstructured reader sea_floor_depth_below_sea_level
14:00:29 DEBUG opendrift.readers.reader_schism_native:349: reading 3D data from unstructured reader upward_sea_water_velocity
14:00:33 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader x_sea_water_velocity
14:00:37 DEBUG opendrift.readers.reader_schism_native:373: reading 3D velocity data from unstructured reader y_sea_water_velocity
14:00:41 DEBUG opendrift.readers.reader_schism_native:566: initialize ReaderBlockUnstruct var_block_after
14:00:41 DEBUG opendrift.readers.reader_schism_native:925: saving readers 2D (horizontal) KDtree to ReaderBlockUnstruct
14:00:41 DEBUG opendrift.readers.reader_schism_native:935: Compute time-varying KDtree for 3D nearest-neighbor search (i.e using zcor)
14:00:42 DEBUG opendrift.readers.reader_schism_native:577: Fetched env-block (size 149233x149233x149233) for time after (2008-01-01 02:30:00)
14:00:42 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 02:00:00) in space (linearNDFast)
14:00:42 DEBUG opendrift.readers.reader_schism_native:606: Interpolating after (2008-01-01 02:30:00) in space (linearNDFast)
14:00:42 DEBUG opendrift.readers.reader_schism_native:621: Interpolating before (2008-01-01 02:00:00, weight 0.50) and
after (2008-01-01 02:30:00, weight 0.50) in time
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8541717850862377 and -0.5734120176593466 degrees.
14:00:42 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:42 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:42 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:42 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:42 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:42 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.117142 (min) 0.119011 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.149542 (min) 0.1757 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.00042492 (min) 0.00331649 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.8292 (min) 72.2146 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:42 DEBUG opendrift.models.basemodel:1538: -41.092087914315485 <- latitude -> -40.91874902638414
14:00:42 DEBUG opendrift.models.basemodel:1543: 173.87535344251154 <- longitude -> 174.29946849062864
14:00:42 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:42 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:42 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:42 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:42 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:42 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:42 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:42 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:42 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:42 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:42 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:42 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:42 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:42 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:42 DEBUG opendrift.models.basemodel:1658: to be seeded: 0, already seeded 300
14:00:42 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:42 DEBUG opendrift.models.basemodel:2881: ======================================================================
14:00:42 INFO opendrift.models.basemodel:2882: 2008-01-01 02:30:00 - step 9 of 9 - 300 active elements (0 deactivated)
14:00:42 DEBUG opendrift.models.basemodel:2888: 0 elements scheduled.
14:00:42 DEBUG opendrift.models.basemodel:2890: ======================================================================
14:00:42 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:42 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:42 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:42 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:42 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:42 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1231: Variable group ['sea_floor_depth_below_sea_level', 'upward_sea_water_velocity', 'x_sea_water_velocity', 'y_sea_water_velocity']
14:00:42 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1236: Calling reader https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:42 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:42 WARNING opendrift.readers.basereader.unstructured:141: z-coordinates are not bounds-checked
14:00:42 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
14:00:42 DEBUG opendrift.readers.reader_schism_native:475: Reader time:
2008-01-01 02:30:00 (before)
2008-01-01 03:00:00 (after)
14:00:42 DEBUG opendrift.readers.reader_schism_native:599: Interpolating before (2008-01-01 02:30:00) in space (linearNDFast)
14:00:42 DEBUG opendrift.readers.reader_schism_native:664: No time interpolation needed - right on time.
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking sea_floor_depth_below_sea_level for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking x_sea_water_velocity for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking y_sea_water_velocity for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:87: Rotating vectors between -0.8550049636262348 and -0.5730335815628601 degrees.
14:00:42 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:42 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:42 DEBUG opendrift.models.basemodel:1414: Creating empty dictionary for profiles not profided by any reader: ['ocean_vertical_diffusivity']
14:00:42 DEBUG opendrift.models.basemodel:1421: Using fallback value 0 for ocean_vertical_diffusivity for all profiles
14:00:42 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:42 DEBUG opendrift.models.basemodel:1524: x_sea_water_velocity: -0.125804 (min) 0.137176 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: y_sea_water_velocity: -0.169118 (min) 0.177556 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: x_wind: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: y_wind: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: upward_sea_water_velocity: -0.00151108 (min) 0.0028862 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: ocean_vertical_diffusivity: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_significant_height: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_period_at_variance_spectral_density_maximum: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_to_direction: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_peak_period_from_variance_spectral_density: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_swell_wave_significant_height: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_to_direction: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_mean_period: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_surface_wind_wave_significant_height: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: surface_downward_x_stress: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: surface_downward_y_stress: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: turbulent_kinetic_energy: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: turbulent_generic_length_scale: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: ocean_mixed_layer_thickness: 50 (min) 50 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: sea_floor_depth_below_sea_level: 14.8849 (min) 72.8428 (max)
14:00:42 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:42 DEBUG opendrift.models.basemodel:1538: -41.093297287750694 <- latitude -> -40.91826793726513
14:00:42 DEBUG opendrift.models.basemodel:1543: 173.8747693354843 <- longitude -> 174.30071037555842
14:00:42 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:42 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:42 DEBUG opendrift.models.physics_methods:982: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
14:00:42 DEBUG opendrift.models.physics_methods:1040: Calculating wave period Tm02 from wind
14:00:42 DEBUG opendrift.models.physics_methods:1050: min: 1.256637, mean: 1.256637, max: 1.256637
14:00:42 DEBUG opendrift.models.physics_methods:990: Calculating wave period from wind, min: 1.256637, mean: 1.256637, max: 1.256637
14:00:42 DEBUG opendrift.models.basemodel:831: No elements hit seafloor.
14:00:42 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
14:00:42 DEBUG opendrift.models.basemodel:2930: Calling OceanDrift.update()
14:00:42 DEBUG opendrift.models.physics_methods:818: No wind for wind-sheared ocean drift
14:00:42 DEBUG opendrift.models.physics_methods:846: No Stokes drift velocity available
14:00:42 DEBUG opendrift.models.oceandrift:367: Vertical advection deactivated
14:00:42 DEBUG opendrift.models.basemodel:2420: Horizontal diffusivity is 0, no random walk.
14:00:42 DEBUG opendrift.models.basemodel:2945: 300 active elements (0 deactivated)
14:00:42 DEBUG opendrift.models.basemodel:2974: Cleaning up
14:00:42 DEBUG opendrift.models.basemodel:1230: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1231: Variable group ['land_binary_mask']
14:00:42 DEBUG opendrift.models.basemodel:1232: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1236: Calling reader global_landmask
14:00:42 DEBUG opendrift.models.basemodel:1237: ----------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1253: Data needed for 300 elements
14:00:42 DEBUG opendrift.readers.basereader.variables:737: Fetching variables from global_landmask
14:00:42 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
14:00:42 DEBUG opendrift.readers.basereader.variables:618: Checking land_binary_mask for invalid values
14:00:42 DEBUG opendrift.readers.basereader.variables:773: Reader projection is latlon - rotation of vectors is not needed.
14:00:42 DEBUG opendrift.models.basemodel:1384: Obtained data for all elements.
14:00:42 DEBUG opendrift.models.basemodel:1397: ---------------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1398: Finished processing all variable groups
14:00:42 DEBUG opendrift.models.basemodel:1522: ------------ SUMMARY -------------
14:00:42 DEBUG opendrift.models.basemodel:1524: land_binary_mask: 0 (min) 0 (max)
14:00:42 DEBUG opendrift.models.basemodel:1526: ---------------------------------
14:00:42 DEBUG opendrift.models.basemodel:1527: 300 active elements
14:00:42 DEBUG opendrift.models.basemodel:1538: -41.09466096670177 <- latitude -> -40.9168289737619
14:00:42 DEBUG opendrift.models.basemodel:1543: 173.87433607680055 <- longitude -> 174.3021798317083
14:00:42 DEBUG opendrift.models.basemodel:1548: -10.0 <- z -> 0.0
14:00:42 DEBUG opendrift.models.basemodel:1549: ---------------------------------
14:00:42 DEBUG opendrift.models.basemodel:2466: No elements to deactivate
===========================
--------------------
Reader performance:
--------------------
global_landmask
0:00:00.0 total
0:00:00.0 preparing
0:00:00.0 reading
0:00:00.0 masking
--------------------
https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
0:01:07.3 total
0:00:19.5 preparing
0:01:07.2 reading
0:00:00.2 interpolation
0:00:00.0 interpolation_time
0:00:00.0 masking
0:00:00.0 rotating vectors
--------------------
Performance:
1:16.4 total time
8.8 configuration
0.0 preparing main loop
0.0 moving elements to ocean
1:07.4 readers
0.0 global_landmask
0.0 postprocessing
1:07.5 main loop
1:07.3 https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
0.0 updating elements
0.0 cleaning up
--------------------
===========================
Model: OceanDrift (OpenDrift version 1.10.7)
300 active Lagrangian3DArray particles (0 deactivated, 0 scheduled)
-------------------
Environment variables:
-----
land_binary_mask
1) global_landmask
-----
sea_floor_depth_below_sea_level
upward_sea_water_velocity
x_sea_water_velocity
y_sea_water_velocity
1) https://thredds.met.no/thredds/dodsC/metusers/knutfd/thredds/netcdf_unstructured_samples/schism_marl20080101_00z_3D.nc
-----
Readers not added for the following variables:
ocean_mixed_layer_thickness
ocean_vertical_diffusivity
sea_surface_swell_wave_peak_period_from_variance_spectral_density
sea_surface_swell_wave_significant_height
sea_surface_swell_wave_to_direction
sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment
sea_surface_wave_period_at_variance_spectral_density_maximum
sea_surface_wave_significant_height
sea_surface_wave_stokes_drift_x_velocity
sea_surface_wave_stokes_drift_y_velocity
sea_surface_wind_wave_mean_period
sea_surface_wind_wave_significant_height
sea_surface_wind_wave_to_direction
surface_downward_x_stress
surface_downward_y_stress
turbulent_generic_length_scale
turbulent_kinetic_energy
x_wind
y_wind
Time:
Start: 2008-01-01 00:30:00 UTC
Present: 2008-01-01 02:45:00 UTC
Calculation steps: 9 * 0:15:00 - total time: 2:15:00
Output steps: 10 * 0:15:00
===========================
14:00:42 DEBUG opendrift.models.basemodel:3180: Setting up map: corners=None, fast=True, lscale=None
14:00:42 WARNING opendrift.models.basemodel:3226: Plotting fast. This will make your plots less accurate.
0.7592347461229789 ALPHA
14:00:44 DEBUG opendrift.models.basemodel:3180: Setting up map: corners=None, fast=False, lscale=None
14:00:44 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
/opt/conda/envs/opendrift/lib/python3.11/site-packages/cartopy/mpl/geoaxes.py:1696: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
result = super().scatter(*args, **kwargs)
14:00:58 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:00 DEBUG opendrift.models.basemodel:3855: Saving animation..
14:01:00 INFO opendrift.models.basemodel:5350: Saving animation to /root/project/docs/source/gallery/animations/example_schism_native_0.gif...
14:01:00 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:01 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:03 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:04 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:06 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:07 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:08 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:10 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:11 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:13 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:14 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:15 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:16 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:17 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:19 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:20 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:21 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:23 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:24 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:26 DEBUG opendrift.readers.reader_global_landmask:83: Adding GSHHG shapes from cartopy, scale: h, extent: (173.47432861328122, 174.70218505859373, -41.29466171264648, -40.71559219360352)..
14:01:27 DEBUG opendrift.models.basemodel:5388: MPLBACKEND = agg
14:01:27 DEBUG opendrift.models.basemodel:5389: DISPLAY = None
14:01:27 DEBUG opendrift.models.basemodel:5390: Time to save animation: 0:00:27.025262
14:01:27 INFO opendrift.models.basemodel:3848: Time to make animation: 0:00:42.797966
14:01:27 DEBUG opendrift.models.basemodel:3855: Saving animation..
14:01:27 INFO opendrift.models.basemodel:5350: Saving animation to /root/project/docs/source/gallery/animations/example_schism_native_1.gif...
14:01:27 DEBUG opendrift.models.basemodel:5388: MPLBACKEND = agg
14:01:27 DEBUG opendrift.models.basemodel:5389: DISPLAY = None
14:01:27 DEBUG opendrift.models.basemodel:5390: Time to save animation: 0:00:00.502273
14:01:27 INFO opendrift.models.basemodel:4038: Time to make animation: 0:00:00.534326
Total running time of the script: (2 minutes 2.209 seconds)