Note
Go to the end to download the full example code.
Sediment drift from Glomma river outlet
from datetime import timedelta, datetime
from opendrift.models.sedimentdrift import SedimentDrift
o = SedimentDrift(loglevel=20) # 0 for debug output
if False: # Using constant south-westwards current and wind
o.set_config('environment:fallback:x_sea_water_velocity', -.05)
o.set_config('environment:fallback:y_sea_water_velocity', -.1)
o.set_config('environment:fallback:y_wind', -6)
o.set_config('environment:fallback:x_wind', -2)
o.set_config('environment:fallback:sea_floor_depth_below_sea_level', 100) # 100m depth
else: # Using live data from Thredds
o.add_readers_from_list([
'https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be'])
14:15:08 INFO opendrift.models.basemodel:533: OpenDriftSimulation initialised (version 1.11.2 / v1.11.2-43-gce9f6bb)
Adding some diffusion
o.set_config('drift:current_uncertainty', .2)
o.set_config('drift:wind_uncertainty', 2)
o.set_config('vertical_mixing:diffusivitymodel', 'windspeed_Large1994')
#o.set_config('vertical_mixing:diffusivitymodel', 'environment')
Source of sediments at Glomma river outlet
lat=59.169194
lon=10.962920
o.seed_elements(lon=lon, lat=lat, number=10000,
time=[datetime.utcnow(), datetime.utcnow()+timedelta(hours=48)],
terminal_velocity=-.001) # 1 mm/s settling speed
o.run(time_step=600, time_step_output=1800, duration=timedelta(hours=36))
14:15:08 INFO opendrift.models.basemodel.environment:218: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster...
14:15:14 INFO opendrift.models.basemodel.environment:245: Fallback values will be used for the following variables which have no readers:
14:15:14 INFO opendrift.models.basemodel.environment:248: x_sea_water_velocity: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: y_sea_water_velocity: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: sea_surface_height: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: upward_sea_water_velocity: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: x_wind: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: y_wind: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: sea_surface_wave_stokes_drift_x_velocity: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: sea_surface_wave_stokes_drift_y_velocity: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: sea_surface_wave_period_at_variance_spectral_density_maximum: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: sea_surface_wave_mean_period_from_variance_spectral_density_second_frequency_moment: 0.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: ocean_vertical_diffusivity: 0.020000
14:15:14 INFO opendrift.models.basemodel.environment:248: ocean_mixed_layer_thickness: 50.000000
14:15:14 INFO opendrift.models.basemodel.environment:248: sea_floor_depth_below_sea_level: 10000.000000
14:15:15 INFO opendrift.models.basemodel:911: Using existing reader for land_binary_mask
14:15:15 INFO opendrift.models.basemodel:922: All points are in ocean
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14:15:15 INFO opendrift.readers.reader_netCDF_CF_generic:102: Opening dataset: https://thredds.met.no/thredds/dodsC/sea/norkyst800m/1h/aggregate_be
/opt/conda/envs/opendrift/lib/python3.11/site-packages/pyproj/crs/crs.py:1286: UserWarning: You will likely lose important projection information when converting to a PROJ string from another format. See: https://proj.org/faq.html#what-is-the-best-format-for-describing-coordinate-reference-systems
proj = self._crs.to_proj4(version=version)
14:15:21 INFO opendrift.readers.reader_netCDF_CF_generic:314: Detected dimensions: {'x': 'X', 'y': 'Y', 'z': 'depth', 'time': 'time'}
/root/project/opendrift/readers/interpolation/interpolators.py:17: RuntimeWarning: overflow encountered in cast
data[mask] = np.finfo(np.float64).min
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14:19:32 INFO opendrift.models.basemodel:2169: Removing 2500 unseeded elements from history array
Plotting the depth vs time
o.plot_property('z')
Animate sediment particles colored by their depth
o.animation(color='z', fast=False, buffer=.01)
#o.animation(color='moving', fast=False, buffer=.01, colorbar=False, legend=['Sedimented', 'Moving'])
14:21:15 INFO opendrift.models.basemodel:4570: Saving animation to /root/project/docs/source/gallery/animations/example_sediments_0.gif...
14:25:50 INFO opendrift.models.basemodel:3003: Time to make animation: 0:06:10.264188
Total running time of the script: (10 minutes 43.469 seconds)